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/*=========================================================================
*
* Copyright Insight Software Consortium
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#include <fstream>
#include "itkImageFileReader.h"
#include "itkNrrdImageIO.h"
#define SPECIFIC_IMAGEIO_MODULE_TEST
int itkNrrdDiffusionTensor3DImageReadTest( int ac, char* av[] )
{
if(ac < 1)
{
std::cerr << "Usage: " << av[0] << " Input\n";
return EXIT_FAILURE;
}
typedef itk::DiffusionTensor3D<float> PixelType;
typedef itk::Image<PixelType, 3> myImage;
typedef itk::ImageFileReader<myImage> ReaderType;
ReaderType::Pointer reader = ReaderType::New();
reader->SetImageIO( itk::NrrdImageIO::New() );
reader->SetFileName(av[1]);
try
{
reader->Update();
}
catch (itk::ExceptionObject & e)
{
std::cerr << "exception in file reader " << std::endl;
std::cerr << e << std::endl;
return EXIT_FAILURE;
}
myImage::Pointer image = reader->GetOutput();
// Pick off some pixels in the test image (the first, the last, and
// a few in between) and make sure that the values are very close to
// what we know to be correct, given that we know exactly what
// volume is being read. I/O errors will generate more than tiny
// differences near representational precision.
float err = 0;
myImage::IndexType coord;
PixelType sample;
coord[0] = 0;
coord[1] = 0;
coord[2] = 0;
sample = image->GetPixel(coord);
err += std::fabs(sample(0,0) - 4.0248222);
err += std::fabs(sample(0,1) - -0.2367909);
err += std::fabs(sample(0,2) - 0.23370844);
err += std::fabs(sample(1,1) - 1.2593846);
err += std::fabs(sample(1,2) - -0.042955428);
err += std::fabs(sample(2,2) - -0.15239859);
coord[0] = 4;
coord[1] = 5;
coord[2] = 6;
sample = image->GetPixel(coord);
err += std::fabs(sample(0,0) - 6.3746634);
err += std::fabs(sample(0,1) - -0.10792637);
err += std::fabs(sample(0,2) - 0.078167915);
err += std::fabs(sample(1,1) - 6.2988205);
err += std::fabs(sample(1,2) - 0.40197921);
err += std::fabs(sample(2,2) - 4.8993769);
coord[0] = 3;
coord[1] = 3;
coord[2] = 3;
sample = image->GetPixel(coord);
err += std::fabs(sample(0,0) - 4.9852095);
err += std::fabs(sample(0,1) - 0.51356757);
err += std::fabs(sample(0,2) - -1.1457335);
err += std::fabs(sample(1,1) - 0.6538533);
err += std::fabs(sample(1,2) - -0.19546235);
err += std::fabs(sample(2,2) - 1.3520061);
coord[0] = 3;
coord[1] = 0;
coord[2] = 5;
sample = image->GetPixel(coord);
err += std::fabs(sample(0,0) - 6.1530757);
err += std::fabs(sample(0,1) - 0.40738893);
err += std::fabs(sample(0,2) - 0.11354899);
err += std::fabs(sample(1,1) - 5.968379);
err += std::fabs(sample(1,2) - -0.22650599);
err += std::fabs(sample(2,2) - 5.0935121);
coord[0] = 0;
coord[1] = 3;
coord[2] = 6;
sample = image->GetPixel(coord);
err += std::fabs(sample(0,0) - 7.3227096);
err += std::fabs(sample(0,1) - -0.34219909);
err += std::fabs(sample(0,2) - -0.2011447);
err += std::fabs(sample(1,1) - 5.6443777);
err += std::fabs(sample(1,2) - 0.43205333);
err += std::fabs(sample(2,2) - 5.3755102);
double thresh = 0.00000041;
if (err > thresh)
{
std::cout << "failure because err == " << err
<< "> " << thresh << std::endl;
return EXIT_FAILURE;
}
else
{
return EXIT_SUCCESS;
}
}
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