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/*=========================================================================
*
* Copyright NumFOCUS
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef itkImage_h
#define itkImage_h
#include "itkImageRegion.h"
#include "itkImportImageContainer.h"
#include "itkDefaultPixelAccessor.h"
#include "itkDefaultPixelAccessorFunctor.h"
#include "itkPoint.h"
#include "itkFixedArray.h"
#include "itkWeakPointer.h"
#include "itkNeighborhoodAccessorFunctor.h"
#include <type_traits> // For is_same
namespace itk
{
/** \class Image
* \brief Templated n-dimensional image class.
*
* Images are templated over a pixel type (modeling the dependent
* variables), and a dimension (number of independent variables). The
* container for the pixel data is the ImportImageContainer.
*
* Within the pixel container, images are modeled as arrays, defined by a
* start index and a size.
*
* The superclass of Image, ImageBase, defines the geometry of the
* image in terms of where the image sits in physical space, how the
* image is oriented in physical space, the size of a pixel, and the
* extent of the image itself. ImageBase provides the methods to
* convert between the index and physical space coordinate frames.
*
* Pixels can be accessed directly using the SetPixel() and GetPixel()
* methods or can be accessed via iterators that define the region of
* the image they traverse.
*
* The pixel type may be one of the native types; a Insight-defined
* class type such as Vector; or a user-defined type. Note that
* depending on the type of pixel that you use, the process objects
* (i.e., those filters processing data objects) may not operate on
* the image and/or pixel type. This becomes apparent at compile-time
* because operator overloading (for the pixel type) is not supported.
*
* The data in an image is arranged in a 1D array as [][][][slice][row][col]
* with the column index varying most rapidly. The Index type reverses
* the order so that with Index[0] = col, Index[1] = row, Index[2] = slice,
* ...
*
* \sa ImageBase
* \sa ImageContainerInterface
*
* \ingroup ImageObjects
* \ingroup ITKCommon
*
* \sphinx
* \sphinxexample{Core/Common/SetPixelValueInOneImage,Set Pixel Value In One Image}
* \sphinxexample{Core/Common/GetImageSize,Get Image Size}
* \sphinxexample{Core/Common/SortITKIndex,Sort ITK Index}
* \sphinxexample{Core/Common/ReturnObjectFromFunction,Return Object From Function}
* \sphinxexample{Core/Common/CreateAnotherInstanceOfAnImage,Create Another Instance Of An Image}
* \sphinxexample{Core/Common/PassImageToFunction,Pass Image To Function}
* \sphinxexample{Core/Common/DeepCopyImage,Deep Copy Image}
* \sphinxexample{Core/Common/ThrowException,Throw Exception}
* \sphinxexample{Core/Common/GetOrSetMemberVariableOfITKClass,Get Or Set Member Variable Of ITK Class}
* \sphinxexample{Core/Common/MiniPipeline,Mini Pipeline}
* \sphinxexample{Core/Common/CheckIfModuleIsPresent,Check If Module Is Present}
* \sphinxexample{Core/Common/DisplayImage,Display Image}
* \endsphinx
*/
template <typename TPixel, unsigned int VImageDimension = 2>
class ITK_TEMPLATE_EXPORT Image : public ImageBase<VImageDimension>
{
public:
ITK_DISALLOW_COPY_AND_MOVE(Image);
/** Standard class type aliases */
using Self = Image;
using Superclass = ImageBase<VImageDimension>;
using Pointer = SmartPointer<Self>;
using ConstPointer = SmartPointer<const Self>;
using ConstWeakPointer = WeakPointer<const Self>;
/** Method for creation through the object factory. */
itkNewMacro(Self);
/** \see LightObject::GetNameOfClass() */
itkOverrideGetNameOfClassMacro(Image);
/** Pixel type alias support. Used to declare pixel type in filters
* or other operations. */
using PixelType = TPixel;
/** Typedef alias for PixelType */
using ValueType = TPixel;
/** Internal Pixel representation. Used to maintain a uniform API
* with Image Adaptors and allow to keep a particular internal
* representation of data while showing a different external
* representation. */
using InternalPixelType = TPixel;
using IOPixelType = PixelType;
/** Accessor type that convert data between internal and external
* representations. */
using AccessorType = DefaultPixelAccessor<PixelType>;
using AccessorFunctorType = DefaultPixelAccessorFunctor<Self>;
/** Typedef for the functor used to access a neighborhood of pixel
* pointers. */
using NeighborhoodAccessorFunctorType = NeighborhoodAccessorFunctor<Self>;
/** Type of image dimension */
using typename Superclass::ImageDimensionType;
/** Index type alias support. An index is used to access pixel values. */
using typename Superclass::IndexType;
using typename Superclass::IndexValueType;
/** Offset type alias support. An offset is used to access pixel values. */
using typename Superclass::OffsetType;
/** Size type alias support. A size is used to define region bounds. */
using typename Superclass::SizeType;
using typename Superclass::SizeValueType;
/** Container used to store pixels in the image. */
using PixelContainer = ImportImageContainer<SizeValueType, PixelType>;
/** Direction type alias support. A matrix of direction cosines. */
using typename Superclass::DirectionType;
/** Region type alias support. A region is used to specify a subset of an image.
*/
using typename Superclass::RegionType;
/** Spacing type alias support. Spacing holds the size of a pixel. The
* spacing is the geometric distance between image samples. */
using typename Superclass::SpacingType;
using typename Superclass::SpacingValueType;
/** Origin type alias support. The origin is the geometric coordinates
* of the index (0,0). */
using typename Superclass::PointType;
/** A pointer to the pixel container. */
using PixelContainerPointer = typename PixelContainer::Pointer;
using PixelContainerConstPointer = typename PixelContainer::ConstPointer;
/** Offset type alias (relative position between indices) */
using typename Superclass::OffsetValueType;
/**
* example usage:
* using OutputImageType = typename ImageType::template Rebind< float >::Type;
*
* \deprecated Use RebindImageType instead
*/
template <typename UPixelType, unsigned int VUImageDimension = VImageDimension>
struct Rebind
{
using Type = itk::Image<UPixelType, VUImageDimension>;
};
template <typename UPixelType, unsigned int VUImageDimension = VImageDimension>
using RebindImageType = itk::Image<UPixelType, VUImageDimension>;
/** Allocate the image memory. The size of the image must
* already be set, e.g. by calling SetRegions(). */
void
Allocate(bool initializePixels = false) override;
/** Restore the data object to its initial state. This means releasing
* memory. */
void
Initialize() override;
/** Fill the image buffer with a value. Be sure to call Allocate()
* first. */
void
FillBuffer(const TPixel & value);
/** \brief Set a pixel value.
*
* Allocate() needs to have been called first -- for efficiency,
* this function does not check that the image has actually been
* allocated yet. */
void
SetPixel(const IndexType & index, const TPixel & value)
{
OffsetValueType offset = this->FastComputeOffset(index);
(*m_Buffer)[offset] = value;
}
/** \brief Get a pixel (read only version).
*
* For efficiency, this function does not check that the
* image has actually been allocated yet. */
const TPixel &
GetPixel(const IndexType & index) const
{
OffsetValueType offset = this->FastComputeOffset(index);
return ((*m_Buffer)[offset]);
}
/** \brief Get a reference to a pixel (e.g. for editing).
*
* For efficiency, this function does not check that the
* image has actually been allocated yet. */
TPixel &
GetPixel(const IndexType & index)
{
OffsetValueType offset = this->FastComputeOffset(index);
return ((*m_Buffer)[offset]);
}
/** \brief Access a pixel. This version can be an lvalue.
*
* For efficiency, this function does not check that the
* image has actually been allocated yet. */
TPixel & operator[](const IndexType & index) { return this->GetPixel(index); }
/** \brief Access a pixel. This version can only be an rvalue.
*
* For efficiency, this function does not check that the
* image has actually been allocated yet. */
const TPixel & operator[](const IndexType & index) const { return this->GetPixel(index); }
/** Return a pointer to the beginning of the buffer. This is used by
* the image iterator class. */
virtual TPixel *
GetBufferPointer()
{
return m_Buffer ? m_Buffer->GetBufferPointer() : nullptr;
}
virtual const TPixel *
GetBufferPointer() const
{
return m_Buffer ? m_Buffer->GetBufferPointer() : nullptr;
}
/** Return a pointer to the container. */
PixelContainer *
GetPixelContainer()
{
return m_Buffer.GetPointer();
}
const PixelContainer *
GetPixelContainer() const
{
return m_Buffer.GetPointer();
}
/** Set the container to use. Note that this does not cause the
* DataObject to be modified. */
void
SetPixelContainer(PixelContainer * container);
/** Graft the data and information from one image to another. This
* is a convenience method to setup a second image with all the meta
* information of another image and use the same pixel
* container. Note that this method is different than just using two
* SmartPointers to the same image since separate DataObjects are
* still maintained. This method is similar to
* ImageSource::GraftOutput(). The implementation in ImageBase
* simply calls CopyInformation() and copies the region ivars.
* The implementation here refers to the superclass' implementation
* and then copies over the pixel container. */
virtual void
Graft(const Self * image);
/** Return the Pixel Accessor object */
AccessorType
GetPixelAccessor()
{
return AccessorType();
}
/** Return the Pixel Accesor object */
const AccessorType
GetPixelAccessor() const
{
return AccessorType();
}
/** Return the NeighborhoodAccessor functor */
NeighborhoodAccessorFunctorType
GetNeighborhoodAccessor()
{
return NeighborhoodAccessorFunctorType();
}
/** Return the NeighborhoodAccessor functor */
const NeighborhoodAccessorFunctorType
GetNeighborhoodAccessor() const
{
return NeighborhoodAccessorFunctorType();
}
unsigned int
GetNumberOfComponentsPerPixel() const override;
/** Returns (image1 == image2).
* \note `operator==` and `operator!=` are defined as function templates
* (rather than as non-templates), just to allow template instantiation of
* `itk::Image` for non-EqualityComparable pixel types.
*/
template <typename TEqualityComparable>
friend std::enable_if_t<std::is_same_v<TEqualityComparable, TPixel>, bool>
operator==(const Image<TEqualityComparable, VImageDimension> & lhs,
const Image<TEqualityComparable, VImageDimension> & rhs)
{
if ((lhs.GetBufferedRegion() != rhs.GetBufferedRegion()) || (lhs.m_Spacing != rhs.m_Spacing) ||
(lhs.m_Origin != rhs.m_Origin) || (lhs.m_Direction != rhs.m_Direction) ||
(lhs.m_InverseDirection != rhs.m_InverseDirection))
{
return false;
}
if (lhs.m_Buffer == rhs.m_Buffer)
{
return true;
}
if ((lhs.m_Buffer == nullptr) || (rhs.m_Buffer == nullptr))
{
return false;
}
auto & lhsBuffer = *(lhs.m_Buffer);
auto & rhsBuffer = *(rhs.m_Buffer);
const auto bufferSize = lhsBuffer.Size();
if (bufferSize != rhsBuffer.Size())
{
return false;
}
const TEqualityComparable * const lhsBufferPointer = lhsBuffer.GetBufferPointer();
const TEqualityComparable * const rhsBufferPointer = rhsBuffer.GetBufferPointer();
return ((lhsBufferPointer == rhsBufferPointer) ||
std::equal(lhsBufferPointer, lhsBufferPointer + bufferSize, rhsBufferPointer));
}
/** Returns (image1 != image2). */
template <typename TEqualityComparable>
friend std::enable_if_t<std::is_same_v<TEqualityComparable, TPixel>, bool>
operator!=(const Image<TEqualityComparable, VImageDimension> & lhs,
const Image<TEqualityComparable, VImageDimension> & rhs)
{
return !(lhs == rhs);
}
protected:
Image() = default;
void
PrintSelf(std::ostream & os, Indent indent) const override;
void
Graft(const DataObject * data) override;
~Image() override = default;
/** Compute helper matrices used to transform Index coordinates to
* PhysicalPoint coordinates and back. This method is virtual and will be
* overloaded in derived classes in order to provide backward compatibility
* behavior in classes that did not used to take image orientation into
* account. */
void
ComputeIndexToPhysicalPointMatrices() override;
using Superclass::Graft;
private:
/** Memory for the current buffer. */
PixelContainerPointer m_Buffer{ PixelContainer::New() };
};
} // end namespace itk
#ifndef ITK_MANUAL_INSTANTIATION
# include "itkImage.hxx"
#endif
#endif
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