File: itkOctree.h

package info (click to toggle)
insighttoolkit5 5.4.3-5
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 704,384 kB
  • sloc: cpp: 783,592; ansic: 628,724; xml: 44,704; fortran: 34,250; python: 22,874; sh: 4,078; pascal: 2,636; lisp: 2,158; makefile: 464; yacc: 328; asm: 205; perl: 203; lex: 146; tcl: 132; javascript: 98; csh: 81
file content (232 lines) | stat: -rw-r--r-- 6,523 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         https://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkOctree_h
#define itkOctree_h

#include "itkOctreeNode.h"
#include "itkImage.h"
#include "itkCommonEnums.h"

namespace itk
{
enum
{
  B2_MASKFILE_BLACK = 0,
  B2_MASKFILE_WHITE = 1,
  B2_MASKFILE_GRAY = 2
};

/**
 * \class OctreeBase
 * \brief Provides non-templated access to templated instances of Octree.
 *
 * \ingroup ITKCommon
 */
class ITKCommon_EXPORT OctreeBase : public Object
{
public:
  /** Standard class type aliases. */
  using Self = OctreeBase;
  using Pointer = SmartPointer<Self>;

  using OctreeEnum = OctreeEnums::Octree;

#if !defined(ITK_LEGACY_REMOVE)
  // We need to expose the enum values at the class level
  // for backwards compatibility
  static constexpr OctreeEnum UNKNOWN_PLANE = OctreeEnum::UNKNOWN_PLANE;
  static constexpr OctreeEnum SAGITAL_PLANE = OctreeEnum::SAGITAL_PLANE;
  static constexpr OctreeEnum CORONAL_PLANE = OctreeEnum::CORONAL_PLANE;
  static constexpr OctreeEnum TRANSVERSE_PLANE = OctreeEnum::TRANSVERSE_PLANE;
#endif

  /** Get the actual tree base
   *
   * Returns the tree, or 0 if the Octree isn't built yet
   */
  virtual OctreeNode *
  GetTree() = 0;

  /** Get tree depth.
   *
   * Depth represents x, for the smallest 2^x >= largest image dimension
   */
  virtual unsigned int
  GetDepth() = 0;

  /** Get tree width.
   *
   * Width == smallest 2^x >= largest image dimension
   * i.e. 2^Depth == Width
   */
  virtual unsigned int
  GetWidth() = 0;

  /** Set the depth, e.g. when reading tree from a file. */
  virtual void
  SetDepth(unsigned int depth) = 0;

  /** Set width, e.g. when reading from a file. */
  virtual void
  SetWidth(unsigned int width) = 0;

  /** Build an Octree from an Image's pixel buffer.
   *
   * Method needed for ImageIO class, which has no handle on image, just
   * the pixel buffer.
   */
  virtual void
  BuildFromBuffer(const void *       buffer,
                  const unsigned int xsize,
                  const unsigned int ysize,
                  const unsigned int zsize) = 0;

  /** Get the ColorTable Pointer
   *
   * Returns color table pointer for this tree.
   *
   * Each Octree has an array of OctreeNodeBranch whose size = the number of
   * color table entries. Each Node in the Octree points either to 8 sub-nodes,
   * or into the ColorTable;  The color table isn't actually used to hold
   * data; it simply provides a range of unique addresses that are distinct
   * from the address of any valid subtree.
   */
  virtual const OctreeNodeBranch *
  GetColorTable() const = 0;

  /** Get the size of the Color Table  */
  virtual int
  GetColorTableSize() const = 0;
};

/**
 * \class Octree
 * \brief Represent a 3D Image with an Octree data structure.
 *
 * Parameterized on Pixel type of the image, number of colors in color
 * table, and a Mapping function, derived from itk::FunctionBase
 * \ingroup ITKCommon
 */
template <typename TPixel, unsigned int ColorTableSize, typename MappingFunctionType>
class ITK_TEMPLATE_EXPORT Octree : public OctreeBase
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(Octree);

  /** Standard class type aliases. */
  using Self = Octree;
  using Superclass = OctreeBase;
  using Pointer = SmartPointer<Self>;
  using ImageType = Image<TPixel, 3>;
  using ImageTypePointer = typename ImageType::Pointer;
  /** Method for creation through the object factory. */
  itkNewMacro(Self);

  /** \see LightObject::GetNameOfClass() */
  itkOverrideGetNameOfClassMacro(Octree);

  ImageTypePointer
  GetImage();

  void
  BuildFromBuffer(const void *       frombuffer,
                  const unsigned int xsize,
                  const unsigned int ysize,
                  const unsigned int zsize) override;

  void BuildFromImage(Image<TPixel, 3> * fromImage);

  Octree();
  ~Octree() override;
  void
  SetColor(unsigned int color)
  {
    m_Tree.SetColor(color);
  }
  void
  SetTree(OctreeNodeBranch * branch)
  {
    m_Tree.SetBranch(branch);
  }
  void
  SetTrueDims(const unsigned int Dim0, const unsigned int Dim1, const unsigned int Dim2);

  int
  GetValue(const unsigned int Dim0, const unsigned int Dim1, const unsigned int Dim2);

  void
  SetWidth(unsigned int width) override;

  void
  SetDepth(unsigned int depth) override;

  unsigned int
  GetWidth() override;

  unsigned int
  GetDepth() override;

  /***
   * Exposes enum values for backwards compatibility
   * */
#if !defined(ITK_LEGACY_REMOVE)
  static constexpr OctreeEnum UNKNOWN_PLANE = OctreeEnum::UNKNOWN_PLANE;
  static constexpr OctreeEnum SAGITAL_PLANE = OctreeEnum::SAGITAL_PLANE;
  static constexpr OctreeEnum CORONAL_PLANE = OctreeEnum::CORONAL_PLANE;
  static constexpr OctreeEnum TRANSVERSE_PLANE = OctreeEnum::TRANSVERSE_PLANE;
#endif

  OctreeNode *
  GetTree() override;

  const OctreeNodeBranch *
  GetColorTable() const override;

  int
  GetColorTableSize() const override;

private:
  OctreeNodeBranch *
  maskToOctree(const TPixel * Mask,
               unsigned int   width,
               unsigned int   x,
               unsigned int   y,
               unsigned int   z,
               unsigned int   xsize,
               unsigned int   ysize,
               unsigned int   zsize);

  OctreeEnum m_Plane{ OctreeEnum::UNKNOWN_PLANE }; // The orientation of the plane for this octree

  // The width of the Octree. This is always a power of 2,
  // and large enough to contain MAX(DIMS[1,2,3])
  unsigned int m_Width{ 0 };

  unsigned int        m_Depth{ 0 };    // The depth of the Octree
  unsigned int        m_TrueDims[3]{}; // The true dimensions of the image
  OctreeNodeBranch    m_ColorTable[ColorTableSize];
  OctreeNode          m_Tree{};
  MappingFunctionType m_MappingFunction{};
};
} // namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#  include "itkOctree.hxx"
#endif

#endif // itkOctree_h