1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544
|
/*=========================================================================
*
* Copyright NumFOCUS
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef itkImageAdaptor_h
#define itkImageAdaptor_h
#include "itkImage.h"
namespace itk
{
template <typename TPixelType, unsigned int VImageDimension>
class VectorImage;
/**
* \class ImageAdaptor
* \brief Give access to partial aspects of voxels from an Image
*
* ImageAdaptors are templated over the ImageType and over a functor
* that will specify what part of the pixel can be accessed
*
* The basic aspects of this class are the types it defines.
*
* Image adaptors can be used as intermediate classes that allow
* the sending of an image to a filter, specifying what part of the
* image pixels the filter will act on.
*
* The TAccessor class should implement the Get and Set methods
* These two will specify how data can be put
* and get from parts of each pixel. It should define the types
* ExternalType and InternalType too.
*
* \ingroup ImageAdaptors
*
* \ingroup ITKImageAdaptors
*
* \sphinx
* \sphinxexample{Core/ImageAdaptors/PresentImageAfterOperation,Present Image After Operation}
* \endsphinx
*/
template <typename TImage, typename TAccessor>
class ITK_TEMPLATE_EXPORT ImageAdaptor : public ImageBase<TImage::ImageDimension>
{
public:
ITK_DISALLOW_COPY_AND_MOVE(ImageAdaptor);
/** Dimension of the image. This constant is used by functions that are
* templated over image type (as opposed to being templated over pixel
* type and dimension) when they need compile time access to the dimension
* of the image. */
static constexpr unsigned int ImageDimension = TImage::ImageDimension;
/** Standard class type aliases. */
using Self = ImageAdaptor;
using Superclass = ImageBase<Self::ImageDimension>;
using Pointer = SmartPointer<Self>;
using ConstPointer = SmartPointer<const Self>;
using ConstWeakPointer = WeakPointer<const Self>;
/** \see LightObject::GetNameOfClass() */
itkOverrideGetNameOfClassMacro(ImageAdaptor);
/** Typedef of unadapted image */
using InternalImageType = TImage;
/** Method for creation through the object factory. */
itkNewMacro(Self);
/** Pixel type alias support Used to declare pixel type in filters
* or other operations. */
using PixelType = typename TAccessor::ExternalType;
/** Pixel type alias support Used to declare pixel type in filters
* or other operations. */
using InternalPixelType = typename TAccessor::InternalType;
using IOPixelType = PixelType;
/** Accessor type that convert data between internal and external
* representations. */
using AccessorType = TAccessor;
/** type alias of the functor that chooses the appropriate accessor
* Image or VectorImage. */
using AccessorFunctorType = typename InternalImageType::AccessorFunctorType::template Rebind<Self>::Type;
/** Index type alias support An index is used to access pixel values. */
using typename Superclass::IndexType;
using IndexValueType = typename IndexType::IndexValueType;
/** Size type alias support A size is used to define region bounds. */
using typename Superclass::SizeType;
using SizeValueType = typename SizeType::SizeValueType;
/** Offset type alias support */
using typename Superclass::OffsetType;
using OffsetValueType = typename OffsetType::OffsetValueType;
/** Region type alias support A region is used to specify a subset of
* an image. */
using typename Superclass::RegionType;
/** Spacing type alias support Spacing holds the size of a pixel. The
* spacing is the geometric distance between image samples. */
using typename Superclass::SpacingType;
/** Origin type alias support The origin is the geometric coordinates
* of the index (0,0). */
using typename Superclass::PointType;
/** Direction type alias support The Direction is a matrix of
* direction cosines that specify the direction between samples.
* */
using typename Superclass::DirectionType;
/**
* example usage:
* using OutputImageType = typename ImageAdaptorType::template Rebind< float >::Type;
*
* \deprecated Use RebindImageType instead
*/
template <typename UPixelType, unsigned int UImageDimension = TImage::ImageDimension>
struct Rebind
{
using Type = Image<UPixelType, UImageDimension>;
};
template <typename UPixelType, unsigned int VUImageDimension = TImage::ImageDimension>
using RebindImageType = itk::Image<UPixelType, VUImageDimension>;
/** Set the region object that defines the size and starting index
* for the largest possible region this image could represent. This
* is used in determining how much memory would be needed to load an
* entire dataset. It is also used to determine boundary
* conditions.
* \sa ImageRegion, SetBufferedRegion(), SetRequestedRegion() */
void
SetLargestPossibleRegion(const RegionType & region) override;
/** Set the region object that defines the size and starting index
* of the region of the image currently load in memory.
* \sa ImageRegion, SetLargestPossibleRegion(), SetRequestedRegion() */
void
SetBufferedRegion(const RegionType & region) override;
/** Set the region object that defines the size and starting index
* for the region of the image requested.
* \sa ImageRegion, SetLargestPossibleRegion(), SetBufferedRegion() */
void
SetRequestedRegion(const RegionType & region) override;
/** Set the requested region from this data object to match the requested
* region of the data object passed in as a parameter. This method
* implements the API from DataObject. The data object parameter must be
* castable to an ImageBase. */
void
SetRequestedRegion(const DataObject * data) override;
/** Get the region object that defines the size and starting index
* for the region of the image requested (i.e., the region of the
* image to be operated on by a filter).
* This method overloads the one in ImageBase in order to delegate
* to the adapted image.
* \sa ImageRegion, SetLargestPossibleRegion(), SetBufferedRegion() */
const RegionType &
GetRequestedRegion() const override;
/** Get the region object that defines the size and starting index
* for the largest possible region this image could represent. This
* is used in determining how much memory would be needed to load an
* entire dataset. It is also used to determine boundary
* conditions.
* This method overloads the one in ImageBase in order to delegate
* to the adapted image.
* \sa ImageRegion, GetBufferedRegion(), GetRequestedRegion() */
const RegionType &
GetLargestPossibleRegion() const override;
/** Get the region object that defines the size and starting index
* of the region of the image currently loaded in memory.
* This method overloads the one in ImageBase in order to delegate
* to the adapted image.
* \sa ImageRegion, SetLargestPossibleRegion(), SetRequestedRegion() */
const RegionType &
GetBufferedRegion() const override;
/** Allocate the image memory. Dimension and Size must be set a priori. */
void
Allocate(bool initialize = false) override;
/** Restore the data object to its initial state. This means releasing
* memory. */
void
Initialize() override;
/** Set a pixel. */
void
SetPixel(const IndexType & index, const PixelType & value)
{
m_PixelAccessor.Set(m_Image->GetPixel(index), value);
}
/** Get a pixel (read only version) */
PixelType
GetPixel(const IndexType & index) const
{
return m_PixelAccessor.Get(m_Image->GetPixel(index));
}
/** Access a pixel. This version can only be an rvalue. */
PixelType operator[](const IndexType & index) const { return m_PixelAccessor.Get(m_Image->GetPixel(index)); }
/** Get the OffsetTable from the adapted image */
const OffsetValueType *
GetOffsetTable() const;
/** Compute Index given an Offset */
IndexType
ComputeIndex(OffsetValueType offset) const;
/** PixelContainer type alias support Used to construct a container for
* the pixel data. */
using PixelContainer = typename TImage::PixelContainer;
using PixelContainerPointer = typename TImage::PixelContainerPointer;
using PixelContainerConstPointer = typename TImage::PixelContainerConstPointer;
/** Return a pointer to the container. */
PixelContainerPointer
GetPixelContainer()
{
return m_Image->GetPixelContainer();
}
const PixelContainer *
GetPixelContainer() const
{
return m_Image->GetPixelContainer();
}
/** Set the container to use. Note that this does not cause the
* DataObject to be modified. */
void
SetPixelContainer(PixelContainer * container);
/** Graft the data and information from one image to another. This
* is a convenience method to setup a second image with all the meta
* information of another image and use the same pixel
* container. Note that this method is different than just using two
* SmartPointers to the same image since separate DataObjects are
* still maintained. This method is similar to
* ImageSource::GraftOutput(). The implementation in ImageBase
* simply calls CopyInformation() and copies the region ivars.
* The implementation here refers to the superclass' implementation
* and then copies over the pixel container. */
virtual void
Graft(const Self * imgData);
/** Convenient type alias. */
using InternalPixelPointerType = InternalPixelType *;
/** Return a pointer to the beginning of the buffer. This is used by
* the image iterator class. */
InternalPixelType *
GetBufferPointer();
const InternalPixelType *
GetBufferPointer() const;
/** Set the spacing (size of a pixel) of the image. */
void
SetSpacing(const SpacingType & spacing) override;
void
SetSpacing(const double * spacing /*[ImageDimension]*/) override;
void
SetSpacing(const float * spacing /*[ImageDimension]*/) override;
/** Get the spacing (size of a pixel) of the image. The
* spacing is the geometric distance between image samples.
* \sa SetSpacing() */
const SpacingType &
GetSpacing() const override;
/** Get the origin of the image. The origin is the geometric
* coordinates of the image origin.
* \sa SetOrigin() */
const PointType &
GetOrigin() const override;
/** Set the origin of the image. */
void
SetOrigin(const PointType origin) override;
void
SetOrigin(const double * origin /*[ImageDimension]*/) override;
void
SetOrigin(const float * origin /*[ImageDimension]*/) override;
/** Set the direction of the image. */
void
SetDirection(const DirectionType & direction) override;
/** Get the direction cosines of the image. The direction cosines
* are vectors that point from one pixel to the next.
* For ImageBase and Image, the default direction is identity. */
const DirectionType &
GetDirection() const override;
/** Set Internal Image */
virtual void
SetImage(TImage *);
/** Delegate Modified to the Internal Image */
void
Modified() const override;
/** Delegate GetMTime to the Internal Image */
ModifiedTimeType
GetMTime() const override;
/** Return the Data Accesor object */
AccessorType &
GetPixelAccessor()
{
return m_PixelAccessor;
}
/** Return the Data Accesor object */
const AccessorType &
GetPixelAccessor() const
{
return m_PixelAccessor;
}
/** Sets the Data Accesor object */
void
SetPixelAccessor(const AccessorType & accessor)
{
m_PixelAccessor = accessor;
}
/** Return the Data Accesor object */
void
Update() override;
void
CopyInformation(const DataObject * data) override;
/** Methods to update the pipeline. Called internally by the
* pipeline mechanism. */
void
UpdateOutputInformation() override;
void
SetRequestedRegionToLargestPossibleRegion() override;
void
PropagateRequestedRegion() override;
void
UpdateOutputData() override;
bool
VerifyRequestedRegion() override;
/** Returns the continuous index from a physical point. */
template <typename TIndexRep, typename TCoordRep>
[[nodiscard]] ContinuousIndex<TIndexRep, TImage::ImageDimension>
TransformPhysicalPointToContinuousIndex(const Point<TCoordRep, TImage::ImageDimension> & point) const
{
return m_Image->template TransformPhysicalPointToContinuousIndex<TIndexRep>(point);
}
/** \brief Get the continuous index from a physical point
*
* Returns true if the resulting index is within the image, false otherwise.
*
* \note For performance reasons, if you do not need to use the `bool` return value, please call the corresponding
* overload instead, which has only one parameter (the point), and returns the continuous index.
*
* \sa Transform */
template <typename TCoordRep>
ITK_NODISCARD("Call the overload which has the point as the only parameter and returns the index")
bool TransformPhysicalPointToContinuousIndex(const Point<TCoordRep, Self::ImageDimension> & point,
ContinuousIndex<TCoordRep, Self::ImageDimension> & index) const
{
return m_Image->TransformPhysicalPointToContinuousIndex(point, index);
}
/** Returns the index (discrete) of a voxel from a physical point. */
template <typename TCoordRep>
[[nodiscard]] IndexType
TransformPhysicalPointToIndex(const Point<TCoordRep, Self::ImageDimension> & point) const
{
return m_Image->TransformPhysicalPointToIndex(point);
}
/** Get the index (discrete) from a physical point.
* Floating point index results are truncated to integers.
* Returns true if the resulting index is within the image, false otherwise
*
* \note For performance reasons, if you do not need to use the `bool` return value, please call the corresponding
* overload instead, which has only one parameter (the point), and returns the index.
*
* \sa Transform */
template <typename TCoordRep>
ITK_NODISCARD("Call the overload which has the point as the only parameter and returns the index")
bool TransformPhysicalPointToIndex(const Point<TCoordRep, Self::ImageDimension> & point, IndexType & index) const
{
return m_Image->TransformPhysicalPointToIndex(point, index);
}
/** Get a physical point (in the space which
* the origin and spacing information comes from)
* from a continuous index (in the index space)
* \sa Transform */
template <typename TCoordRep>
void
TransformContinuousIndexToPhysicalPoint(const ContinuousIndex<TCoordRep, Self::ImageDimension> & index,
Point<TCoordRep, Self::ImageDimension> & point) const
{
m_Image->TransformContinuousIndexToPhysicalPoint(index, point);
}
/** Returns a physical point from a continuous index (in the index space) */
template <typename TCoordRep, typename TIndexRep>
[[nodiscard]] Point<TCoordRep, TImage::ImageDimension>
TransformContinuousIndexToPhysicalPoint(const ContinuousIndex<TIndexRep, Self::ImageDimension> & index) const
{
return m_Image->template TransformContinuousIndexToPhysicalPoint<TIndexRep>(index);
}
/** Get a physical point (in the space which
* the origin and spacing information comes from)
* from a discrete index (in the index space)
*
* \sa Transform */
template <typename TCoordRep>
void
TransformIndexToPhysicalPoint(const IndexType & index, Point<TCoordRep, Self::ImageDimension> & point) const
{
m_Image->TransformIndexToPhysicalPoint(index, point);
}
/** Returns a physical point from a discrete index (in the index space) */
template <typename TCoordRep>
[[nodiscard]] Point<TCoordRep, Self::ImageDimension>
TransformIndexToPhysicalPoint(const IndexType & index) const
{
return m_Image->template TransformIndexToPhysicalPoint<TCoordRep>(index);
}
template <typename TCoordRep>
void
TransformLocalVectorToPhysicalVector(const FixedArray<TCoordRep, Self::ImageDimension> & inputGradient,
FixedArray<TCoordRep, Self::ImageDimension> & outputGradient) const
{
m_Image->TransformLocalVectorToPhysicalVector(inputGradient, outputGradient);
}
template <typename TVector>
[[nodiscard]] TVector
TransformLocalVectorToPhysicalVector(const TVector & inputGradient) const
{
TVector outputGradient;
TransformLocalVectorToPhysicalVector(inputGradient, outputGradient);
return outputGradient;
}
template <typename TCoordRep>
void
TransformPhysicalVectorToLocalVector(const FixedArray<TCoordRep, Self::ImageDimension> & inputGradient,
FixedArray<TCoordRep, Self::ImageDimension> & outputGradient) const
{
m_Image->TransformPhysicalVectorToLocalVector(inputGradient, outputGradient);
}
template <typename TVector>
[[nodiscard]] TVector
TransformPhysicalVectorToLocalVector(const TVector & inputGradient) const
{
TVector outputGradient;
TransformPhysicalVectorToLocalVector(inputGradient, outputGradient);
return outputGradient;
}
protected:
ImageAdaptor();
~ImageAdaptor() override = default;
void
PrintSelf(std::ostream & os, Indent indent) const override;
void
Graft(const DataObject * data) override;
using Superclass::Graft;
private:
// a specialized method to update PixelAccessors for VectorImages,
// to have the correct vector length of the image.
template <typename TPixelType>
void
UpdateAccessor(typename itk::VectorImage<TPixelType, ImageDimension> * itkNotUsed(dummy))
{
this->m_PixelAccessor.SetVectorLength(this->m_Image->GetNumberOfComponentsPerPixel());
}
// The other image types don't expect an accessor which needs any updates
template <typename T>
void
UpdateAccessor(T * itkNotUsed(dummy))
{}
// Adapted image, most of the calls to ImageAdaptor
// will be delegated to this image
typename TImage::Pointer m_Image{};
// Data accessor object,
// it converts the presentation of a pixel
AccessorType m_PixelAccessor{};
};
} // end namespace itk
#ifndef ITK_MANUAL_INSTANTIATION
# include "itkImageAdaptor.hxx"
#endif
#endif
|