1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
|
/*=========================================================================
*
* Copyright NumFOCUS
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef itkDTITubeSpatialObjectPoint_h
#define itkDTITubeSpatialObjectPoint_h
#include "itkTubeSpatialObjectPoint.h"
#include "itkDiffusionTensor3D.h"
#include "vnl/vnl_vector_fixed.h"
namespace itk
{
/** \class DTITubeSpatialObjectPointEnums
* \brief Contains all enum classes used by DTITubeSpatialObjectPoint class.
* \ingroup ITKSpatialObjects
*/
class DTITubeSpatialObjectPointEnums
{
public:
/**
* \class DTITubeSpatialObjectPointField
* \ingroup ITKSpatialObjects
* If you add a type here you need to modify the TranslateEnumToChar
to translate the enum to a string */
enum class DTITubeSpatialObjectPointField : uint8_t
{
FA = 0,
ADC = 1,
GA = 2
};
};
// Define how to print enumeration
extern ITKSpatialObjects_EXPORT std::ostream &
operator<<(std::ostream & out, const DTITubeSpatialObjectPointEnums::DTITubeSpatialObjectPointField value);
/**
* \class DTITubeSpatialObjectPoint
* \brief Point used for a tube definition
*
* This class contains all the functions necessary to define a point
* that can be used to build tubes.
*
* \sa DTITubeSpatialObject
* \ingroup ITKSpatialObjects
*/
template <unsigned int TPointDimension = 3>
class ITK_TEMPLATE_EXPORT DTITubeSpatialObjectPoint : public TubeSpatialObjectPoint<TPointDimension>
{
public:
using Self = DTITubeSpatialObjectPoint;
using Superclass = TubeSpatialObjectPoint<TPointDimension>;
using PointType = Point<double, TPointDimension>;
using VectorType = Vector<double, TPointDimension>;
using CovariantVectorType = CovariantVector<double, TPointDimension>;
using FieldType = std::pair<std::string, float>;
using FieldListType = std::vector<FieldType>;
using DTITubeSpatialObjectPointFieldEnum = DTITubeSpatialObjectPointEnums::DTITubeSpatialObjectPointField;
#if !defined(ITK_LEGACY_REMOVE)
/** Enables backwards compatibility for enum values */
using FieldEnumType = DTITubeSpatialObjectPointFieldEnum;
// We need to expose the enum values at the class level
// for backwards compatibility
static constexpr DTITubeSpatialObjectPointFieldEnum FA = DTITubeSpatialObjectPointFieldEnum::FA;
static constexpr DTITubeSpatialObjectPointFieldEnum ADC = DTITubeSpatialObjectPointFieldEnum::ADC;
static constexpr DTITubeSpatialObjectPointFieldEnum GA = DTITubeSpatialObjectPointFieldEnum::GA;
#endif
/** Constructor. This one defines the number of dimensions in the
* DTITubeSpatialObjectPoint */
DTITubeSpatialObjectPoint();
/** Copy Constructor */
DTITubeSpatialObjectPoint(const DTITubeSpatialObjectPoint & other);
/** Default destructor. */
~DTITubeSpatialObjectPoint() override = default;
/** Set/Get the tensor matrix */
void
SetTensorMatrix(const DiffusionTensor3D<double> & matrix)
{
std::copy(matrix.Begin(), matrix.End(), m_TensorMatrix);
}
void
SetTensorMatrix(const DiffusionTensor3D<float> & matrix)
{
std::copy(matrix.Begin(), matrix.End(), m_TensorMatrix);
}
void
SetTensorMatrix(const float * matrix)
{
for (unsigned int i = 0; i < 6; ++i)
{
m_TensorMatrix[i] = matrix[i];
}
}
const float *
GetTensorMatrix() const
{
return m_TensorMatrix;
}
/** Copy one DTITubeSpatialObjectPoint to another. */
Self &
operator=(const DTITubeSpatialObjectPoint & rhs);
/** Add a field to the point list. */
void
AddField(const char * name, float value);
/** Add a field to the point list. */
void
AddField(DTITubeSpatialObjectPointFieldEnum name, float value);
/** Set a field value. */
void
SetField(DTITubeSpatialObjectPointFieldEnum name, float value);
void
SetField(const char * name, float value);
/** Get the list of fields. */
const FieldListType &
GetFields() const
{
return m_Fields;
}
/** Get the value of the specified field. */
float
GetField(const char * name) const;
float
GetField(DTITubeSpatialObjectPointFieldEnum name) const;
protected:
float m_TensorMatrix[6]{};
FieldListType m_Fields{};
/** Print the object */
void
PrintSelf(std::ostream & os, Indent indent) const override;
/** Translate the enum to a string. */
std::string
TranslateEnumToChar(DTITubeSpatialObjectPointFieldEnum name) const;
};
} // end of namespace itk
#ifndef ITK_MANUAL_INSTANTIATION
# include "itkDTITubeSpatialObjectPoint.hxx"
#endif
#endif // itkDTITubeSpatialObjectPoint_h
|
