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/*=========================================================================
*
* Copyright NumFOCUS
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef itkIsoContourDistanceImageFilter_h
#define itkIsoContourDistanceImageFilter_h
#include "itkImageToImageFilter.h"
#include "itkNarrowBand.h"
#include "itkNeighborhoodIterator.h"
#include "itkNumericTraits.h"
#include <mutex>
namespace itk
{
/**
* \class IsoContourDistanceImageFilter
* \brief Compute an approximate distance from an interpolated isocontour
* to the close grid points.
*
* For standard level set algorithms, it is useful to periodically
* reinitialize the evolving image to prevent numerical accuracy
* problems in computing derivatives.
* This reinitialization is done by computing a signed distance map
* to the current level set.
* This class provides the first step in this reinitialization by
* computing an estimate of the distance from the interpolated isocontour
* to the pixels (or voxels) that are close to it, i.e. for which the
* isocontour crosses a segment between them and one of their direct
* neighbors.
* This class supports narrowbanding. If the input narrowband is provided,
* the algorithm will only locate the level set within the input narrowband.
*
* Implementation of this class is based on
* Fast and Accurate Redistancing for Level Set Methods
*`Krissian K. and Westin C.F.',
* EUROCAST NeuroImaging Workshop Las Palmas Spain,
* Ninth International Conference on Computer Aided Systems Theory , pages 48-51, Feb 2003.
*
*
* \ingroup LevelSetSegmentation
*
* \ingroup ITKDistanceMap
*/
template <typename TInputImage, typename TOutputImage>
class ITK_TEMPLATE_EXPORT IsoContourDistanceImageFilter : public ImageToImageFilter<TInputImage, TOutputImage>
{
public:
ITK_DISALLOW_COPY_AND_MOVE(IsoContourDistanceImageFilter);
/** Standard class type aliases. */
using Self = IsoContourDistanceImageFilter;
using Superclass = ImageToImageFilter<TInputImage, TOutputImage>;
using Pointer = SmartPointer<Self>;
using ConstPointer = SmartPointer<const Self>;
/** Method for creation through the object factory. */
itkNewMacro(Self);
/** \see LightObject::GetNameOfClass() */
itkOverrideGetNameOfClassMacro(IsoContourDistanceImageFilter);
/**Typedefs from the superclass */
using typename Superclass::InputImageType;
using typename Superclass::OutputImageType;
/** Dimensionality of input and output data is assumed to be the same.
* It is inherited from the superclass. */
static constexpr unsigned int ImageDimension = TInputImage::ImageDimension;
static constexpr unsigned int OutputImageDimension = TOutputImage::ImageDimension;
/** The pixel type of the output image will be used in computations.
* Inherited from the superclass. */
using PixelType = typename OutputImageType::PixelType;
using InputPixelType = typename InputImageType::PixelType;
using PixelRealType = typename NumericTraits<InputPixelType>::RealType;
using OutputImageRegionType = typename OutputImageType::RegionType;
using InputSizeType = typename InputImageType::SizeType;
using SizeType = typename OutputImageType::SizeType;
using InputIndexType = typename InputImageType::IndexType;
using IndexType = typename OutputImageType::IndexType;
using InputSpacingType = typename InputImageType::SpacingType;
/** NarrowBand type alias support */
using BandNodeType = BandNode<IndexType, PixelType>;
using NarrowBandType = NarrowBand<BandNodeType>;
using NarrowBandPointer = typename NarrowBandType::Pointer;
using RegionType = typename NarrowBandType::RegionType;
using ConstBandIterator = typename NarrowBandType::ConstIterator;
using BandIterator = typename NarrowBandType::Iterator;
/** Set/Get the value of the level set to be located. The default value is
* 0. */
itkSetMacro(LevelSetValue, PixelRealType);
itkGetConstMacro(LevelSetValue, PixelRealType);
/** Set/Get the value of the level set to be located. The default value is
* 0. */
itkSetMacro(FarValue, PixelType);
itkGetConstMacro(FarValue, PixelType);
/** Set/Get the narrowbanding flag. By default, narrowbanding is switched
* off. */
itkSetMacro(NarrowBanding, bool);
itkGetConstMacro(NarrowBanding, bool);
itkBooleanMacro(NarrowBanding);
/** Set/Get the narrowband. */
void
SetNarrowBand(NarrowBandType * ptr);
NarrowBandPointer
GetNarrowBand() const
{
return m_NarrowBand;
}
#ifdef ITK_USE_CONCEPT_CHECKING
// Begin concept checking
itkConceptMacro(InputEqualityComparableCheck, (Concept::EqualityComparable<InputPixelType>));
itkConceptMacro(OutputEqualityComparableCheck, (Concept::EqualityComparable<PixelType>));
itkConceptMacro(SameDimensionCheck, (Concept::SameDimension<ImageDimension, OutputImageDimension>));
itkConceptMacro(DoubleConvertibleToOutputCheck, (Concept::Convertible<double, PixelType>));
itkConceptMacro(InputConvertibleToOutputCheck, (Concept::Convertible<InputPixelType, PixelType>));
itkConceptMacro(OutputAdditiveOperatorsCheck, (Concept::AdditiveOperators<PixelType>));
itkConceptMacro(InputOStreamWritableCheck, (Concept::OStreamWritable<InputPixelType>));
itkConceptMacro(OutputOStreamWritableCheck, (Concept::OStreamWritable<PixelType>));
// End concept checking
#endif
protected:
IsoContourDistanceImageFilter();
~IsoContourDistanceImageFilter() override = default;
void
PrintSelf(std::ostream & os, Indent indent) const override;
void
ThreadedGenerateData(const OutputImageRegionType & outputRegionForThread, ThreadIdType threadId) override;
void
DynamicThreadedGenerateData(const OutputImageRegionType &) override
{
itkExceptionMacro("This class requires threadId so it must use classic multi-threading model");
}
void
GenerateData() override;
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION
ThreaderFullCallback(void * arg);
void
ThreadedGenerateDataFull(const OutputImageRegionType & outputRegionForThread, ThreadIdType threadId);
void
ThreadedGenerateDataBand(const OutputImageRegionType & outputRegionForThread, ThreadIdType threadId);
/** Split the band if the narrowband mode is used. */
void
BeforeThreadedGenerateData() override;
void
GenerateInputRequestedRegion() override;
void
EnlargeOutputRequestedRegion(DataObject *) override;
using InputNeighbordIteratorType = ConstNeighborhoodIterator<InputImageType>;
using OutputNeighborhoodIteratorType = NeighborhoodIterator<OutputImageType>;
void
ComputeValue(const InputNeighbordIteratorType & inNeigIt,
OutputNeighborhoodIteratorType & outNeigIt,
unsigned int center,
const std::vector<OffsetValueType> & stride);
private:
PixelRealType m_LevelSetValue{};
PixelType m_FarValue{};
InputSpacingType m_Spacing{};
bool m_NarrowBanding{};
NarrowBandPointer m_NarrowBand{};
std::vector<RegionType> m_NarrowBandRegion{};
std::mutex m_Mutex{};
};
} // namespace itk
#ifndef ITK_MANUAL_INSTANTIATION
# include "itkIsoContourDistanceImageFilter.hxx"
#endif
#endif
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