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/*=========================================================================
*
* Copyright NumFOCUS
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#include "itkIsoContourDistanceImageFilter.h"
#include "itkRescaleIntensityImageFilter.h"
#include "itkShiftScaleImageFilter.h"
#include "itkMultiplyImageFilter.h"
#include "itkMath.h"
#include "itkCommand.h"
// For debugging
namespace
{
// The following class is used to support callbacks
// on the filter in the pipeline that follows later
class ShowProgressObject
{
public:
ShowProgressObject(itk::ProcessObject * o) { m_Process = o; }
void
ShowProgress()
{
std::cout << "Progress " << m_Process->GetProgress() << std::endl;
}
itk::ProcessObject::Pointer m_Process;
};
// simple signed distance function
template <typename TPoint>
double
SimpleSignedDistance(const TPoint & p)
{
TPoint center;
center.Fill(50);
double radius = 19.5;
double accum = 0.0;
for (unsigned int j = 0; j < TPoint::PointDimension; ++j)
{
accum += itk::Math::sqr(p[j] - static_cast<double>(center[j]));
}
accum = std::sqrt(accum);
return (accum - radius);
}
} // namespace
int
itkIsoContourDistanceImageFilterTest(int, char *[])
{
constexpr unsigned int ImageDimension = 2;
using PixelType = float;
using ImageType = itk::Image<PixelType, ImageDimension>;
using OutputImageType = itk::Image<unsigned char, ImageDimension>;
using PointType = itk::Point<double, ImageDimension>;
// Fill an input image with simple signed distance function
auto image = ImageType::New();
ImageType::SizeType size;
size.Fill(128);
ImageType::RegionType region(size);
image->SetRegions(region);
image->Allocate();
using Iterator = itk::ImageRegionIteratorWithIndex<ImageType>;
Iterator iter(image, region);
iter.GoToBegin();
while (!iter.IsAtEnd())
{
PointType point;
image->TransformIndexToPhysicalPoint(iter.GetIndex(), point);
iter.Set(SimpleSignedDistance(point));
++iter;
}
// Squash up the level sets by mulitplying with a scalar
using MultiplierType = itk::ShiftScaleImageFilter<ImageType, ImageType>;
auto multiplier = MultiplierType::New();
multiplier->SetInput(image);
multiplier->SetScale(0.5);
// multiplier->SetShift( 0.0 );
// Set up image filter
using IsoContourType = itk::IsoContourDistanceImageFilter<ImageType, ImageType>;
auto isocontour = IsoContourType::New();
isocontour->SetInput(multiplier->GetOutput());
isocontour->SetFarValue(10);
// isocontour->SetNumberOfWorkUnits(8);
if (itk::Math::NotAlmostEquals(isocontour->GetFarValue(), 10))
{
std::cout << "isocontour->GetFarValue() != 10" << std::endl;
return EXIT_FAILURE;
}
ShowProgressObject progressWatch(isocontour);
itk::SimpleMemberCommand<ShowProgressObject>::Pointer command;
command = itk::SimpleMemberCommand<ShowProgressObject>::New();
command->SetCallbackFunction(&progressWatch, &ShowProgressObject::ShowProgress);
isocontour->AddObserver(itk::ProgressEvent(), command);
// For debugging
using CastFilterType = itk::RescaleIntensityImageFilter<ImageType, OutputImageType>;
auto caster = CastFilterType::New();
caster->SetInput(isocontour->GetOutput());
try
{
caster->Update();
}
catch (const itk::ExceptionObject & err)
{
err.Print(std::cerr);
return EXIT_FAILURE;
}
// Create narrowband
using BandNodeType = IsoContourType::BandNodeType;
using NarrowBandType = IsoContourType::NarrowBandType;
auto band = NarrowBandType::New();
// Create nodes
BandNodeType node;
iter.GoToBegin();
while (!iter.IsAtEnd())
{
if (itk::Math::abs(iter.Get()) < 5)
{
node.m_Index = iter.GetIndex();
band->PushBack(node);
}
++iter;
}
// Run isocontour with narrowband
isocontour->NarrowBandingOn();
// isocontour->SetNumberOfWorkUnits(8);
isocontour->SetNarrowBand(band);
try
{
isocontour->Update();
}
catch (const itk::ExceptionObject & err)
{
err.Print(std::cerr);
return EXIT_FAILURE;
}
// Check if inside/outside points remain the same after reinitialization
using CheckerType = itk::MultiplyImageFilter<ImageType, ImageType, ImageType>;
auto checker = CheckerType::New();
checker->SetInput1(image);
checker->SetInput2(isocontour->GetOutput());
checker->Update();
using CalculatorType = itk::MinimumMaximumImageCalculator<ImageType>;
auto calculator = CalculatorType::New();
calculator->SetImage(checker->GetOutput());
calculator->Compute();
double minValue = calculator->GetMinimum();
double maxValue = calculator->GetMaximum();
std::cout << "Min. product = " << minValue << std::endl;
std::cout << "Max. product = " << maxValue << std::endl;
if (minValue < 0.0)
{
std::cout << "Inside/Outside mismatch at ";
std::cout << calculator->GetIndexOfMinimum() << std::endl;
std::cout << "Test failed" << std::endl;
return EXIT_FAILURE;
}
// Exercise other member functions
isocontour->Print(std::cout);
// Exercise the narrowband version
isocontour->SetLevelSetValue(1.0);
isocontour->SetLevelSetValue(0.0);
isocontour->NarrowBandingOff();
isocontour->Update();
std::cout << "Level set value = " << isocontour->GetLevelSetValue() << std::endl;
std::cout << "Narrow banding = " << isocontour->GetNarrowBanding() << std::endl;
// We will use the output narrowband from the last run as the input narrowband
// isocontour->SetInputNarrowBand( nodes );
// isocontour->Update();
std::cout << "Test passed" << std::endl;
return EXIT_SUCCESS;
}
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