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/*=========================================================================
*
* Copyright NumFOCUS
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#include "itkGradientRecursiveGaussianImageFilter.h"
#include "itkVector.h"
#include "itkVariableLengthVector.h"
#include "itkVectorImage.h"
#include "itkImageFileWriter.h"
#include "itkTestingMacros.h"
/*
* Test itkGradientRecursiveGaussianFilter with various types
* of images of vector pixels, and with VectorImage.
* Some results validation testing is done directly below.
* The output of the various types with same pixel length are compared via ctest, to
* verify they're the same.
*/
template <typename TImageType, typename TGradImageType, unsigned int TComponents>
int
itkGradientRecursiveGaussianFilterTest3Run(typename TImageType::PixelType & myPixelBorder,
typename TImageType::PixelType & myPixelFill,
typename TGradImageType::Pointer & outputImage,
char * outputFilename)
{
using myImageType = TImageType;
using myGradImageType = TGradImageType;
const unsigned int myComponents = TComponents;
// Define the dimension of the images
const unsigned int myDimension = myImageType::ImageDimension;
// Declare the type of the index to access images
using myIndexType = itk::Index<myDimension>;
// Declare the type of the size
using mySizeType = itk::Size<myDimension>;
// Declare the type of the Region
using myRegionType = itk::ImageRegion<myDimension>;
// Create the image
auto inputImage = myImageType::New();
// Define their size, and start index
mySizeType size;
size[0] = 8;
size[1] = 8;
size[2] = 8;
myIndexType start;
start.Fill(0);
myRegionType region{ start, size };
// Initialize Image A
inputImage->SetRegions(region);
inputImage->SetNumberOfComponentsPerPixel(myComponents);
inputImage->Allocate();
// Declare Iterator type for the input image
using myIteratorType = itk::ImageRegionIteratorWithIndex<myImageType>;
// Create one iterator for the Input Image A (this is a light object)
myIteratorType it(inputImage, inputImage->GetRequestedRegion());
// Initialize the content of Image A
while (!it.IsAtEnd())
{
it.Set(myPixelBorder);
++it;
}
size[0] = 4;
size[1] = 4;
size[2] = 4;
start[0] = 2;
start[1] = 2;
start[2] = 2;
// Create one iterator for an internal region
region.SetSize(size);
region.SetIndex(start);
myIteratorType itb(inputImage, region);
// Initialize the content the internal region
while (!itb.IsAtEnd())
{
itb.Set(myPixelFill);
++itb;
}
// Declare the type for the
using myFilterType = itk::GradientRecursiveGaussianImageFilter<myImageType, myGradImageType>;
using myGradientImageType = typename myFilterType::OutputImageType;
// Create a Filter
auto filter = myFilterType::New();
// Connect the input images
filter->SetInput(inputImage);
// Select the value of Sigma
filter->SetSigma(2.5);
// Execute the filter
filter->Update();
// Get the Smart Pointer to the Filter Output
// It is important to do it AFTER the filter is Updated
// Because the object connected to the output may be changed
// by another during GenerateData() call
outputImage = filter->GetOutput();
// Write the output to file
using WriterType = itk::ImageFileWriter<myGradientImageType>;
auto writer = WriterType::New();
writer->SetFileName(outputFilename);
writer->SetInput(outputImage);
writer->Update();
// All objects should be automatically destroyed at this point
return EXIT_SUCCESS;
}
template <typename TGradImage1DType, typename TGradImageVectorType>
int
itkGradientRecursiveGaussianFilterTest3Compare(typename TGradImage1DType::Pointer scalarPixelGradImage,
typename TGradImageVectorType::Pointer vectorPixelGradImage,
unsigned int numDimensions)
{
itk::ImageRegionIteratorWithIndex<TGradImage1DType> scalarIt(scalarPixelGradImage,
scalarPixelGradImage->GetBufferedRegion());
itk::ImageRegionIteratorWithIndex<TGradImageVectorType> vector2DIt(vectorPixelGradImage,
vectorPixelGradImage->GetBufferedRegion());
scalarIt.GoToBegin();
vector2DIt.GoToBegin();
typename TGradImage1DType::PixelType::ValueType tolerance = 1e-5;
while (!scalarIt.IsAtEnd() && !vector2DIt.IsAtEnd())
{
typename TGradImage1DType::PixelType scalar = scalarIt.Value();
typename TGradImageVectorType::PixelType vector = vector2DIt.Value();
for (unsigned int d = 0; d < numDimensions; ++d)
{
for (unsigned int c = 0; c < vector.GetNumberOfComponents() / numDimensions; ++c)
{
typename TGradImage1DType::PixelType::ValueType truth = scalar[d] / (c + 1.0);
typename TGradImage1DType::PixelType::ValueType test = vector[d + (c * numDimensions)];
if (itk::Math::abs(truth - test) > tolerance)
{
std::cerr << "One or more components of vector gradient image pixel are not as expected: " << std::endl
<< "d, c, truth, test: " << d << ' ' << c << ' ' << truth << ' ' << test << std::endl
<< "scalar pixel gradient: " << scalar << " vector pixel gradient: " << vector << std::endl;
return EXIT_FAILURE;
}
}
}
++scalarIt;
++vector2DIt;
}
return EXIT_SUCCESS;
}
int
itkGradientRecursiveGaussianFilterTest3(int argc, char * argv[])
{
if (argc != 8)
{
std::cerr << "Missing parameters." << std::endl;
std::cerr << "Usage: " << itkNameOfTestExecutableMacro(argv);
std::cerr << " outputImageFile1 outputImageFile2 outputImageFile3 outputImageFile4 outputImageFile5 "
"outputImageFile6 outputImageFile7"
<< std::endl;
return EXIT_FAILURE;
}
int result = EXIT_SUCCESS;
constexpr unsigned int myDimension = 3;
constexpr unsigned int myComponents1D = 1;
using myGrad1DType = itk::Vector<float, myDimension * myComponents1D>;
using myGradImage1DType = itk::Image<myGrad1DType, myDimension>;
// Test with Image of 1D Vector
using myVector1DType = itk::Vector<float, myComponents1D>;
using myImageVector1DType = itk::Image<myVector1DType, myDimension>;
myGradImage1DType::Pointer vector1DGradImage = nullptr;
myVector1DType vector1Dborder;
myVector1DType vector1Dfill;
vector1Dborder.Fill(0.0);
vector1Dfill.Fill(100.0);
int runResult = itkGradientRecursiveGaussianFilterTest3Run<myImageVector1DType, myGradImage1DType, myComponents1D>(
vector1Dborder, vector1Dfill, vector1DGradImage, argv[1]);
if (runResult == EXIT_FAILURE)
{
std::cerr << "Failed with Image<1D-Vector> type." << std::endl;
result = runResult;
}
// Test with Image of *scalar* pixels to verify same results
using myScalarPixelType = float;
using myImageScalarType = itk::Image<myScalarPixelType, myDimension>;
myGradImage1DType::Pointer scalarPixelGradImage = nullptr;
myScalarPixelType pixelBorder;
myScalarPixelType pixelFill;
pixelBorder = myScalarPixelType{};
pixelFill = static_cast<myScalarPixelType>(100.0);
runResult = itkGradientRecursiveGaussianFilterTest3Run<myImageScalarType, myGradImage1DType, myComponents1D>(
pixelBorder, pixelFill, scalarPixelGradImage, argv[2]);
if (runResult == EXIT_FAILURE)
{
std::cerr << "Failed with scalar pixel type." << std::endl;
result = runResult;
}
// Test with Image of 2D Vector
constexpr unsigned int myComponents2D = 2;
using myGrad2DType = itk::Vector<float, myDimension * myComponents2D>;
using myGradImage2DType = itk::Image<myGrad2DType, myDimension>;
using myVector2DType = itk::Vector<float, myComponents2D>;
using myImage2DType = itk::Image<myVector2DType, myDimension>;
using myVarVector2DType = itk::VariableLengthVector<float>;
using myImageVar2DType = itk::Image<myVarVector2DType, myDimension>;
myGradImage2DType::Pointer vector2DGradImage = nullptr;
myVector2DType vector2Dborder;
myVector2DType vector2Dfill;
vector2Dborder.Fill(pixelBorder);
vector2Dfill[0] = pixelFill;
vector2Dfill[1] = pixelFill / 2.0;
runResult = itkGradientRecursiveGaussianFilterTest3Run<myImage2DType, myGradImage2DType, myComponents2D>(
vector2Dborder, vector2Dfill, vector2DGradImage, argv[3]);
if (runResult == EXIT_FAILURE)
{
std::cerr << "Failed with 2D Vector type." << std::endl;
result = runResult;
}
// Compare the scalar pixel result to 2D vector result
int compareResult = itkGradientRecursiveGaussianFilterTest3Compare<myGradImage1DType, myGradImage2DType>(
scalarPixelGradImage, vector2DGradImage, myDimension);
if (compareResult == EXIT_FAILURE)
{
std::cerr << "Failed for 2D-vector comparison." << std::endl;
return EXIT_FAILURE;
}
// Test with Image of 2D VariableLengthVector
myGradImage2DType::Pointer varVector2DGradImage = nullptr;
myVarVector2DType varVector2Dborder;
myVarVector2DType varVector2Dfill;
varVector2Dborder.SetSize(myComponents2D);
varVector2Dfill.SetSize(myComponents2D);
varVector2Dborder.Fill(0.0);
varVector2Dfill[0] = 100.0;
varVector2Dfill[1] = 50.0;
runResult = itkGradientRecursiveGaussianFilterTest3Run<myImageVar2DType, myGradImage2DType, myComponents2D>(
varVector2Dborder, varVector2Dfill, varVector2DGradImage, argv[4]);
if (runResult == EXIT_FAILURE)
{
std::cerr << "Failed with 2D VariableLengthVector type." << std::endl;
result = runResult;
}
// Test with 2D VectorImage
using myVecImageType = itk::VectorImage<float, myDimension>;
myGradImage2DType::Pointer vectorImage2DGradImage = nullptr;
runResult = itkGradientRecursiveGaussianFilterTest3Run<myVecImageType, myGradImage2DType, myComponents2D>(
varVector2Dborder, varVector2Dfill, vectorImage2DGradImage, argv[5]);
if (runResult == EXIT_FAILURE)
{
std::cerr << "Failed with 2D-vector VectorImage type." << std::endl;
result = runResult;
}
// Test with Image of 3D Vector
constexpr unsigned int myComponents3D = 3;
using myGrad3DType = itk::Vector<float, myDimension * myComponents3D>;
using myGradImage3DType = itk::Image<myGrad3DType, myDimension>;
using myVector3DType = itk::Vector<float, myComponents3D>;
using myImage3DType = itk::Image<myVector3DType, myDimension>;
myGradImage3DType::Pointer vector3DGradImage = nullptr;
myVector3DType vector3Dborder;
myVector3DType vector3Dfill;
vector3Dborder.Fill(pixelBorder);
vector3Dfill[0] = pixelFill;
vector3Dfill[1] = pixelFill / 2.0;
vector3Dfill[2] = pixelFill / 3.0;
runResult = itkGradientRecursiveGaussianFilterTest3Run<myImage3DType, myGradImage3DType, myComponents3D>(
vector3Dborder, vector3Dfill, vector3DGradImage, argv[6]);
if (runResult == EXIT_FAILURE)
{
std::cerr << "Failed with 3D Vector type." << std::endl;
result = runResult;
}
// Compare the scalar pixel result to 3D vector result
compareResult = itkGradientRecursiveGaussianFilterTest3Compare<myGradImage1DType, myGradImage3DType>(
scalarPixelGradImage, vector3DGradImage, myDimension);
if (compareResult == EXIT_FAILURE)
{
std::cerr << "Failed for 3D-vector comparison." << std::endl;
return EXIT_FAILURE;
}
// Test with 3D VectorImage
using myVecImageType = itk::VectorImage<float, myDimension>;
using myVarVector3DType = itk::VariableLengthVector<float>;
myGradImage3DType::Pointer vectorImage3DGradImage = nullptr;
myVarVector3DType varVector3Dborder;
myVarVector3DType varVector3Dfill;
varVector3Dborder.SetSize(myComponents3D);
varVector3Dborder.Fill(vector3Dborder[0]);
varVector3Dfill.SetSize(myComponents3D);
varVector3Dfill[0] = vector3Dfill[0];
varVector3Dfill[1] = vector3Dfill[1];
varVector3Dfill[2] = vector3Dfill[2];
runResult = itkGradientRecursiveGaussianFilterTest3Run<myVecImageType, myGradImage3DType, myComponents3D>(
varVector3Dborder, varVector3Dfill, vectorImage3DGradImage, argv[7]);
if (runResult == EXIT_FAILURE)
{
std::cerr << "Failed with 3D-vector VectorImage type." << std::endl;
result = runResult;
}
return result;
}
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