File: itkMetaImageIOMetaDataTest.cxx

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/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         https://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#include <iostream>
#include "itkImageFileReader.h"
#include "itkImageFileWriter.h"
#include "itkRandomImageSource.h"
#include "itkMetaDataObject.h"
#include "itkMetaImageIO.h"
#include "itkTestingMacros.h"


// Specific ImageIO test

/** read an image using ITK -- image-based template */
template <typename TImage>
typename TImage::Pointer
ReadImage(const std::string & fileName)
{
  typename TImage::Pointer image;
  using ReaderType = itk::ImageFileReader<TImage>;
  auto reader = ReaderType::New();
  reader->SetFileName(fileName.c_str());

  itk::MetaImageIO::Pointer io = itk::MetaImageIO::New();
  reader->SetImageIO(io);

  try
  {
    reader->Update();
  }
  catch (const itk::ExceptionObject & err)
  {
    std::cout << "Caught an exception: " << std::endl;
    std::cout << err << ' ' << __FILE__ << ' ' << __LINE__ << std::endl;
    throw;
  }
  catch (...)
  {
    std::cout << "Error while reading in image " << fileName << std::endl;
    throw;
  }
  image = reader->GetOutput();
  return image;
}

/** write an image using ITK */
template <typename ImageType>
void
WriteImage(typename ImageType::Pointer & image, const std::string & fileName)
{
  using WriterType = itk::ImageFileWriter<ImageType>;
  auto writer = WriterType::New();

  writer->SetFileName(fileName.c_str());

  itk::MetaImageIO::Pointer io = itk::MetaImageIO::New();
  writer->SetImageIO(io);

  writer->SetInput(image);

  try
  {
    writer->Update();
  }
  catch (const itk::ExceptionObject & err)
  {
    std::cout << "Exception Object caught: " << std::endl;
    std::cout << err << std::endl;
    throw;
  }
  catch (...)
  {
    std::cout << "Error while writing in image " << fileName << std::endl;
    throw;
  }
}

template <typename TValue>
bool
Equal(TValue & a, TValue & b)
{
  return a == b;
}
template <>
bool
Equal<double>(double & a, double & b)
{
  double diff(itk::Math::abs(a - b));
  if (diff == 0.0)
  {
    return true;
  }
  // base test roughly on magnitude of
  // arguments.
  diff /= itk::Math::abs(a) + itk::Math::abs(b);
  if (diff > 0.000001)
  {
    return false;
  }
  return true;
}

template <>
bool
Equal<float>(float & a, float & b)
{
  double _a(a);
  double _b(b);
  return Equal(_a, _b);
}

template <typename TValue>
bool
TestMatch(itk::MetaDataDictionary & dict, const char * const key, TValue expectedValue)
{
  std::istringstream is;
  std::string        stringValue;
  if (!itk::ExposeMetaData<std::string>(dict, key, stringValue))
  {
    std::cerr << "Key " << key << " not found" << std::endl;
    return false;
  }
  TValue nativeValue;
  is.str(stringValue);
  is >> nativeValue;
  if (!Equal<TValue>(nativeValue, expectedValue))
  {
    std::cerr << "Key " << key << " found with unexpected value " << nativeValue << std::endl;
    return false;
  }
  return true;
}

int
itkMetaImageIOMetaDataTest(int argc, char * argv[])
{
  if (argc < 2)
  {
    std::cerr << "Usage: " << itkNameOfTestExecutableMacro(argv) << " metadatatest outputimage" << std::endl;
    return 1;
  }
  // write out an image -- using a random image source, but
  // the image data is irrelevant
  const int Dim(2);

  using PixelType = unsigned char;
  using ImageType = itk::Image<PixelType, Dim>;
  using SourceType = itk::RandomImageSource<ImageType>;

  auto                     source = SourceType::New();
  ImageType::SizeValueType size[Dim] = { 32, 32 };
  source->SetSize(size);
  source->SetMin(itk::NumericTraits<PixelType>::min());
  source->SetMax(itk::NumericTraits<PixelType>::max());
  source->Update();

  ImageType::Pointer        randImage(source->GetOutput());
  itk::MetaDataDictionary & dict(randImage->GetMetaDataDictionary());
  //
  // add an arbitrary key to check whether it persists with the image
  //
  {
    // Add string key
    std::string key("hello");
    std::string value("world");
    itk::EncapsulateMetaData<std::string>(dict, key, value);
  }

  const auto maxSupportedStringSize = (MET_MAX_NUMBER_OF_FIELD_VALUES * sizeof(double)) - 1;
  static_assert(maxSupportedStringSize == std::numeric_limits<int16_t>::max(), "Assert that this max value is 32767");

  {
    // Add string of the maximum supported size.
    const std::string key("max_string");
    const std::string value(maxSupportedStringSize, 'x');
    itk::EncapsulateMetaData<std::string>(dict, key, value);
  }
  {
    // Add double
    std::string key("double");
    double      value(7.891011);
    itk::EncapsulateMetaData<double>(dict, key, value);
  }
  {
    // Add float
    std::string key("float");
    float       value(1.23456);
    itk::EncapsulateMetaData<float>(dict, key, value);
  }
  {
    // Add long
    std::string key("long");
    long        value(-31415926);
    itk::EncapsulateMetaData<int>(dict, key, value);
  }
  {
    // Add unsigned long
    std::string   key("unsigned_long");
    unsigned long value(27182818);
    itk::EncapsulateMetaData<unsigned long>(dict, key, value);
  }
  {
    // Add long long
    std::string key("long_long");
    long long   value(-8589934592ll);
    itk::EncapsulateMetaData<long long>(dict, key, value);
  }
  {
    // Add unsigned long long
    std::string        key("unsigned_long_long");
    unsigned long long value(8589934592ull);
    itk::EncapsulateMetaData<unsigned long long>(dict, key, value);
  }
  {
    // Add int
    std::string key("int");
    int         value(-3141592);
    itk::EncapsulateMetaData<int>(dict, key, value);
  }
  {
    // Add unsigned int
    std::string  key("unsigned_int");
    unsigned int value(2718281);
    itk::EncapsulateMetaData<unsigned int>(dict, key, value);
  }
  {
    // Add short
    std::string key("short");
    short       value(-16384);
    itk::EncapsulateMetaData<short>(dict, key, value);
  }
  {
    // Add short
    std::string  key("unsigned_short");
    unsigned int value(8192);
    itk::EncapsulateMetaData<unsigned short>(dict, key, value);
  }
  {
    // Add char
    std::string key("char");
    char        value('c');
    itk::EncapsulateMetaData<char>(dict, key, value);
  }
  {
    std::string key("bool");
    bool        value(true);
    itk::EncapsulateMetaData<bool>(dict, key, value);
  }

  WriteImage<ImageType>(randImage, argv[1]);

  //
  // Read the image just written and check if the key we added
  // persisted with the file.
  ImageType::Pointer randImage2 = ReadImage<ImageType>(argv[1]);

  dict = randImage2->GetMetaDataDictionary();

  std::string value("world");
  if (!TestMatch<std::string>(dict, "hello", value))
  {
    return 1; // error
  }
  if (!TestMatch<std::string>(dict, "max_string", std::string(maxSupportedStringSize, 'x')))
  {
    return 1; // error
  }
  // Add double
  if (!TestMatch<double>(dict, "double", 7.891011))
  {
    return 1; // error
  }
  // Add float
  if (!TestMatch<float>(dict, "float", 1.23456))
  {
    return 1; // error
  }
  // Add long
  if (!TestMatch<long>(dict, "long", -31415926))
  {
    return 1; // error
  }
  // Add unsigned long
  if (!TestMatch<unsigned long>(dict, "unsigned_long", 27182818))
  {
    return 1; // error
  }
  // Add long long
  if (!TestMatch<long long>(dict, "long_long", -8589934592ll))
  {
    return 1; // error
  }
  // Add unsigned long long
  if (!TestMatch<unsigned long long>(dict, "unsigned_long_long", 8589934592ull))
  {
    return 1; // error
  }
  // Add int
  if (!TestMatch<int>(dict, "int", -3141592))
  {
    return 1; // error
  }
  // Add unsigned int
  if (!TestMatch<unsigned int>(dict, "unsigned_int", 2718281))
  {
    return 1; // error
  }
  // Add short
  if (!TestMatch<short>(dict, "short", -16384))
  {
    return 1; // error
  }
  // Add short
  if (!TestMatch<unsigned int>(dict, "unsigned_short", 8192))
  {
    return 1; // error
  }
  // Add char
  if (!TestMatch<char>(dict, "char", 'c'))
  {
    return 1; // error
  }
  // Add unsigned char
  if (!TestMatch<bool>(dict, "bool", true))
  {
    return 1; // error
  }

  return 0;
}