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/*=========================================================================
*
* Copyright NumFOCUS
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef itkLevelSetEquationTermBase_h
#define itkLevelSetEquationTermBase_h
#include "itkObject.h"
#include "itkHeavisideStepFunctionBase.h"
#include <unordered_set>
namespace itk
{
/**
* \class LevelSetEquationTermBase
* \brief Abstract class to represents a term in the level-set evolution PDE
*
* \tparam TInput Input Image Type
* \tparam TLevelSetContainer Level set function container type
*
* Evolving single level-set function \f$ \phi \f$ can be expressed as follows:
* \f[
* \frac{\partial \phi(p)}{\partial \tau} = \sum\limits_{i=1}^{N} \alpha_{i} \cdot \omega_i(p)
* \f]
* where \f$\omega_i\f$ is a term which could depend on the level-set function,
* the input image; and \f$\alpha_i\f$ is a weight to balance the contribution of
* each term in the PDE.
*
* \sa LevelSetEquationContainer
*
* \ingroup ITKLevelSetsv4
*/
template <typename TInputImage, // Input image
typename TLevelSetContainer>
class ITK_TEMPLATE_EXPORT LevelSetEquationTermBase : public Object
{
public:
ITK_DISALLOW_COPY_AND_MOVE(LevelSetEquationTermBase);
using Self = LevelSetEquationTermBase;
using Pointer = SmartPointer<Self>;
using ConstPointer = SmartPointer<const Self>;
using Superclass = Object;
/** \see LightObject::GetNameOfClass() */
itkOverrideGetNameOfClassMacro(LevelSetEquationTermBase);
using InputImageType = TInputImage;
using InputImagePointer = typename InputImageType::Pointer;
using InputPixelType = typename InputImageType::PixelType;
using InputPixelRealType = typename NumericTraits<InputPixelType>::RealType;
/** Level-set function container type */
using LevelSetContainerType = TLevelSetContainer;
using LevelSetIdentifierType = typename LevelSetContainerType::LevelSetIdentifierType;
using LevelSetContainerPointer = typename LevelSetContainerType::Pointer;
using LevelSetType = typename LevelSetContainerType::LevelSetType;
using LevelSetPointer = typename LevelSetContainerType::LevelSetPointer;
using LevelSetOutputPixelType = typename LevelSetContainerType::OutputType;
using LevelSetOutputRealType = typename LevelSetContainerType::OutputRealType;
using LevelSetInputIndexType = typename LevelSetContainerType::InputIndexType;
using LevelSetGradientType = typename LevelSetContainerType::GradientType;
using LevelSetHessianType = typename LevelSetContainerType::HessianType;
using LevelSetDataType = typename LevelSetContainerType::LevelSetDataType;
using DomainMapImageFilterType = typename LevelSetContainerType::DomainMapImageFilterType;
using CacheImageType = typename LevelSetContainerType::CacheImageType;
using HeavisideType = HeavisideStepFunctionBase<LevelSetOutputRealType, LevelSetOutputRealType>;
// using HeavisidePointer = typename HeavisideType::Pointer;
using HeavisideConstPointer = typename HeavisideType::ConstPointer;
/** Set/Get the image to be segmented */
itkSetObjectMacro(Input, InputImageType);
itkGetModifiableObjectMacro(Input, InputImageType);
itkSetMacro(Coefficient, LevelSetOutputRealType);
itkGetMacro(Coefficient, LevelSetOutputRealType);
itkSetMacro(CurrentLevelSetId, LevelSetIdentifierType);
itkGetMacro(CurrentLevelSetId, LevelSetIdentifierType);
itkGetModifiableObjectMacro(CurrentLevelSetPointer, LevelSetType);
virtual void
SetLevelSetContainer(LevelSetContainerType * iContainer);
itkGetModifiableObjectMacro(LevelSetContainer, LevelSetContainerType);
/** Returns the weighted term contribution at the given location iP, i.e.
* \f$ \alpha_i \cdot \omega_i( p ) \f$
*/
virtual LevelSetOutputRealType
Evaluate(const LevelSetInputIndexType & iP);
virtual LevelSetOutputRealType
Evaluate(const LevelSetInputIndexType & iP, const LevelSetDataType & iData);
/** \todo to be documented. */
virtual void
Initialize(const LevelSetInputIndexType & iP) = 0;
/** Initialize the parameters in the terms prior to an iteration */
virtual void
InitializeParameters() = 0;
/** Supply updates at pixels to keep the term parameters always updated */
virtual void
UpdatePixel(const LevelSetInputIndexType & iP,
const LevelSetOutputRealType & oldValue,
const LevelSetOutputRealType & newValue) = 0;
/** Get the CFL contribution for the given term */
itkGetConstMacro(CFLContribution, LevelSetOutputRealType);
/** Set/Get the term name */
itkSetStringMacro(TermName);
itkGetStringMacro(TermName);
/** Update the term parameter values at end of iteration */
virtual void
Update() = 0;
using RequiredDataType = std::unordered_set<std::string>;
const RequiredDataType &
GetRequiredData() const;
protected:
/** Default Constructor */
LevelSetEquationTermBase();
/** Destructor */
~LevelSetEquationTermBase() override = default;
void
SetUp();
/** Returns the term contribution for a given location iP, i.e.
* \f$ \omega_i( p ) \f$. This method must be implemented in all
* class which inherits from this class.
*/
virtual LevelSetOutputRealType
Value(const LevelSetInputIndexType & iP) = 0;
virtual LevelSetOutputRealType
Value(const LevelSetInputIndexType & iP, const LevelSetDataType & iData) = 0;
/** Input image */
InputImagePointer m_Input{};
/** Container of level-set function */
LevelSetContainerPointer m_LevelSetContainer{};
/** Id of the current level-set function */
LevelSetIdentifierType m_CurrentLevelSetId{};
LevelSetPointer m_CurrentLevelSetPointer{};
/** Coefficient \f$ \alpha_i \f$ */
LevelSetOutputRealType m_Coefficient{};
/** Contribution to the CFL condition (which will be used to compute the
* the time step at the next iteration
*/
LevelSetOutputRealType m_CFLContribution{};
/** Heaviside function to be used. Depending on the term expression,
* this one may need to be provided
*/
HeavisideConstPointer m_Heaviside{};
/** Name to be given to the term. Note by default, one name is provided,
* but end-users may rename differently each term.
*/
std::string m_TermName{};
RequiredDataType m_RequiredData{};
};
} // namespace itk
#ifndef ITK_MANUAL_INSTANTIATION
# include "itkLevelSetEquationTermBase.hxx"
#endif
#endif
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