File: CMakeLists.txt

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# TODO: drop -E option once all filters/spatial objects/cost functions are actually wrapped
itk_python_add_test(
  NAME
  NonBlockingPythonFilterCoverage
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/wrappingCoverage.py
  -E
  -b
  Filter
  -e
  ${CMAKE_CURRENT_SOURCE_DIR}/exclude-filters.txt
  ${ITK_INCLUDE_DIRS})
itk_python_add_test(
  NAME
  NonBlockingPythonSpatialObjectCoverage
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/wrappingCoverage.py
  -E
  -b
  SpatialObject
  ${ITK_INCLUDE_DIRS})
if(ITK_BUILD_DEFAULT_MODULES)
  itk_python_add_test(
    NAME
    NonBlockingPythonCostFunctionCoverage
    COMMAND
    ${CMAKE_CURRENT_SOURCE_DIR}/wrappingCoverage.py
    -E
    -b
    CostFunction
    ${ITK_INCLUDE_DIRS})
  itk_python_add_test(
    NAME
    PythonOptimizerCoverage
    COMMAND
    ${CMAKE_CURRENT_SOURCE_DIR}/wrappingCoverage.py
    -b
    Optimizer
    ${ITK_INCLUDE_DIRS})
endif()

itk_python_add_test(
  NAME
  PythonImageIOCoverage
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/wrappingCoverage.py
  -b
  ImageIO
  -e
  ${CMAKE_CURRENT_SOURCE_DIR}/exclude-imageio.txt
  ${ITK_INCLUDE_DIRS})
itk_python_add_test(
  NAME
  PythonTransformCoverage
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/wrappingCoverage.py
  -b
  Transform
  -e
  ${CMAKE_CURRENT_SOURCE_DIR}/exclude-transform.txt
  ${ITK_INCLUDE_DIRS})

itk_python_add_test(
  NAME
  PythonFindEmptyClasses
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/findEmptyClasses.py)
itk_python_add_test(
  NAME
  PythonGetNameOfClass
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/getNameOfClass.py)
itk_python_add_test(
  NAME
  PythonTiming
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/timing.py)
itk_python_add_test(
  NAME
  PythonBuildOptions
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/build_options.py)
itk_python_add_test(
  NAME
  PythonVerifyGetOutputAPIConsistency
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/verifyGetOutputAPIConsistency.py)
itk_python_add_test(
  NAME
  PythonVerifyTTypeAPIConsistency
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/verifyTTypeAPIConsistency.py)
itk_python_add_test(
  NAME
  PythonTypeTest
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/PythonTypeTest.py)
itk_python_add_test(
  NAME
  PythonComplex
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/complex.py)
itk_python_add_test(
  NAME
  PythonHelperFunctions
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/helpers.py)
itk_python_add_test(
  NAME
  PythonLazyModule
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/lazy.py)
itk_python_add_test(
  NAME
  PythonNoLazyModule
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/nolazy.py)
itk_python_add_test(
  NAME
  PythonNoDefaultFactories
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/nodefaultfactories.py)
itk_python_add_test(
  NAME
  PythonDICOMSeries
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/dicomSeries.py
  DATA{${ITK_DATA_ROOT}/Input/DicomSeries/Image0075.dcm}
  DATA{${ITK_DATA_ROOT}/Input/DicomSeries/Image0076.dcm}
  DATA{${ITK_DATA_ROOT}/Input/DicomSeries/Image0077.dcm})
itk_python_add_test(
  NAME
  PyImageFilterTest
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/PyImageFilterTest.py)
itk_python_add_test(
  NAME
  PythonConvertMetaData
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/test_metadata.py
  DATA{${WrapITK_SOURCE_DIR}/images/r16slice.nii.gz}
  DATA{${WrapITK_SOURCE_DIR}/images/sourceImage.nii.gz}
  DATA{${WrapITK_SOURCE_DIR}/images/warp2D.nii.gz}
  DATA{${WrapITK_SOURCE_DIR}/images/warp3D.nii.gz})

# some tests will fail if dim=2 and unsigned short are not wrapped
intersection(WRAP_2 2 "${ITK_WRAP_IMAGE_DIMS}")
if(ITK_WRAP_unsigned_char AND WRAP_2)
  if(ITK_BUILD_DEFAULT_MODULES)
    itk_python_add_test(
      NAME
      PythonTypemapsTest
      COMMAND
      ${CMAKE_CURRENT_SOURCE_DIR}/PythonTypemapsTest.py)
    itk_python_add_test(
      NAME
      PythonTemplateTest
      COMMAND
      ${CMAKE_CURRENT_SOURCE_DIR}/PythonTemplateTest.py)
    itk_python_add_test(
      NAME
      PythonModifiedTimeTest
      COMMAND
      ${CMAKE_CURRENT_SOURCE_DIR}/ModifiedTime.py)
    itk_python_add_test(
      NAME
      PythonTemplatedPipelineTest
      TEST_DRIVER_ARGS
      --compare
      ${ITK_TEST_OUTPUT_DIR}/templated_pipeline.png
      DATA{${WrapITK_SOURCE_DIR}/images/templated_pipeline.png}
      COMMAND
      ${CMAKE_CURRENT_SOURCE_DIR}/templated_pipeline.py
      DATA{${WrapITK_SOURCE_DIR}/images/2th_cthead1.png}
      ${ITK_TEST_OUTPUT_DIR}/templated_pipeline.png
      10)
    itk_python_add_test(
      NAME
      PythonModuleToModuleTest
      COMMAND
      ${CMAKE_CURRENT_SOURCE_DIR}/module2module.py
      DATA{${WrapITK_SOURCE_DIR}/images/cthead1.png}
      5)
    itk_python_add_test(
      NAME
      PythonExtrasTest
      COMMAND
      ${CMAKE_CURRENT_SOURCE_DIR}/extras.py
      DATA{${WrapITK_SOURCE_DIR}/images/cthead1.png}
      DATA{../../../../Testing/Data/Input/mushroom.vtk}
      DATA{../../../../Testing/Data/Input/LinearTransform.h5}
      ${ITK_TEST_OUTPUT_DIR}/out.png
      ${ITK_TEST_OUTPUT_DIR}/extras-mushroom.vtk
      ${ITK_TEST_OUTPUT_DIR}
      ${ITK_TEST_OUTPUT_DIR}/LinearTransformWritten.h5
      ${ExternalData_BINARY_ROOT}/Testing/Data/Input/DicomSeries)
    set_tests_properties(PythonExtrasTest PROPERTIES DEPENDS PythonDICOMSeries)
    itk_python_add_test(
      NAME
      PythonXarrayTest
      COMMAND
      ${CMAKE_CURRENT_SOURCE_DIR}/test_xarray.py
      DATA{${WrapITK_SOURCE_DIR}/images/cthead1.png})
    itk_python_add_test(
      NAME
      PythonImreadSingleFileListTest
      COMMAND
      ${CMAKE_CURRENT_SOURCE_DIR}/test_imread_single_file_list.py)
  endif()
endif()

unique(types "${WRAP_ITK_SCALAR};UC")
# signed char can't be used to store an image with values up to 255
list(REMOVE_ITEM types SC)
foreach(d ${ITK_WRAP_IMAGE_DIMS})
  foreach(t ${types})
    itk_python_add_test(
      NAME
      PythonSimplePipeline${t}${d}
      TEST_DRIVER_ARGS
      --compare
      ${ITK_TEST_OUTPUT_DIR}/simple_pipeline${t}${d}.nrrd
      DATA{${WrapITK_SOURCE_DIR}/images/cthead1.png}
      COMMAND
      ${CMAKE_CURRENT_SOURCE_DIR}/simple_pipeline.py
      ${t}
      ${d}
      DATA{${WrapITK_SOURCE_DIR}/images/cthead1.png}
      ${ITK_TEST_OUTPUT_DIR}/simple_pipeline${t}${d}.nrrd)
  endforeach()
endforeach()

# Test the lazyloading in a multiprocessing environment
itk_python_add_test(
  NAME
  PythonMultiprocessLazyLoad
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/multiprocess_lazy_loading.py
  DATA{${WrapITK_SOURCE_DIR}/images/cthead1.png}
  DATA{${WrapITK_SOURCE_DIR}/images/templated_pipeline.png}
  DATA{${WrapITK_SOURCE_DIR}/images/2th_cthead1.png})

# Test proper reading and writing of VariableLengthVector
itk_python_add_test(
  NAME
  PythonVLVReadWriteTest
  TEST_DRIVER_ARGS
  --compare
  ${ITK_TEST_OUTPUT_DIR}/TestVLV.seg.nrrd
  DATA{${WrapITK_SOURCE_DIR}/images/TestVLV.seg.nrrd}
  COMMAND
  ${CMAKE_CURRENT_SOURCE_DIR}/readWriteVLV.py
  DATA{${WrapITK_SOURCE_DIR}/images/TestVLV.seg.nrrd}
  ${ITK_TEST_OUTPUT_DIR}/TestVLV.seg.nrrd
  59
  85
  58
  5)