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Source: insilicoseq
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Sao I Kuan <saoikuan@gmail.com>,
Étienne Mollier <emollier@debian.org>
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
python3-setuptools,
python3-all,
python3-biopython,
python3-joblib,
python3-numpy,
python3-pysam,
python3-requests,
python3-scipy,
python3-pytest <!nocheck>,
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/insilicoseq
Vcs-Git: https://salsa.debian.org/med-team/insilicoseq.git
Homepage: https://github.com/HadrienG/InSilicoSeq
Rules-Requires-Root: no
Testsuite: autopkgtest-pkg-python
Package: insilicoseq
Architecture: all
Depends: ${misc:Depends},
${python3:Depends}
Recommends: ${python3:Recommends}
Suggests: ${python3:Suggests}
Description: sequencing simulator producing realistic Illumina reads
Primarily intended for simulating metagenomic samples, it can also be
used to produce sequencing data from a single genome.
.
InSilicoSeq is written in Python, and use kernel density estimators to
model the read quality of real sequencing data.
.
InSilicoSeq support substitution, insertion and deletion errors. If
you don't have the use for insertion and deletion error a basic
error model is provided.
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