File: gc.conf

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# GeneControl configuration example
# this config file is loaded by default
# fit it to your needs or indicate/load a different config file per command-line execution resp. in the graphical user interface.

# indicate needed files
# 1. Gene Annotations
# 2. Amino Acid Sequences
# 3. Path for the output files (optional)
# 4. Path to reference chromosomes
FgeneAnnoFile	=	M:/Downloads/Data/human/knownGene.txt
FgeneAaSeqFile	=	M:/Downloads/Data/human/knownGenePep.txt
FoutputPath		=	M:/Downloads/Data/human/
refSeqPath		=	M:/Downloads/Data/human/

# define the desired minimum similarity between reference amino acid sequences and self translated sequences
# comparisons of sequences with different lengths will result in a similarity of zero
minSimilarity	=	0.95