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# iPiG configuration example
# this config file is loaded by default
# fit it to your needs or indicate/load a different config file per command-line execution resp. in the graphical user interface.
# indicate needed files
# 1. Gene Annotations
# 2. Amino Acid Sequences
# 3. UniProt ID-mapping tab file
# 4. Proteom fasta
geneAnnoFile = M:/Downloads/Data/human/knownGene_good.txt
geneAaSeqFile = M:/Downloads/Data/human/knownGenePep.txt
protMapFile = M:/Downloads/Data/human/HUMAN_9606_idmapping_selected.tab
protSeqFile = M:/Downloads/Data/human/HUMAN.fasta
# define score boundaries for colors/suffixes in bed/gff3 output.
# the interval [minScore,maxScore] (int) is divided into 3 parts represented by the 3 colors for bed or type suffixes in gff3.
# the separation positions can be defined with threshold 1 and 2 (int or double), which have to be located in the interval.
minScore = 0
maxScore = 150
threshold1 = 50
threshold2 = 100
# for bed output, define three rgb values (comma separated) to represent the 3 parts
color1 = 191,191,191
color2 = 255,159,0
color3 = 0,255,0
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