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Source: iqtree
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Kevin Murray <kdmfoss@gmail.com>
Section: science
Priority: optional
Build-Depends: debhelper (>= 10),
cmake,
libeigen3-dev,
libsprng2-dev,
mpi-default-dev,
zlib1g-dev,
help2man,
time
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/iqtree.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/iqtree.git
Homepage: http://www.cibiv.at/software/iqtree/
Package: iqtree
Architecture: amd64 hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386
Depends: ${shlibs:Depends},
${misc:Depends}
Description: efficient phylogenetic software by maximum likelihood
IQ-TREE is a very efficient maximum likelihood phylogenetic software
with following key features among others:
.
* A novel fast and effective stochastic algorithm to estimate maximum
likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms
of likelihood while requiring similar amount of computing time (see
Nguyen et al., 2015)
* An ultrafast bootstrap approximation to assess branch supports (see
Minh et al., 2013).
* A wide range of substitution models for binary, DNA, protein, codon,
and morphological alignments.
* Ultrafast model selection for all data types, 10 to 100 times faster
than jModelTest and ProtTest.
* Finding best partition scheme like PartitionFinder.
* Partitioned models with mixed data types for phylogenomic (multi-
gene) alignments, allowing for separate, proportional, or joint
branch lengths among genes.
* Supporting the phylogenetic likelihod library (PLL) (see Flouri et
al., 2014)
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