File: ecopdmtreeset.h

package info (click to toggle)
iqtree 1.5.3%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 9,780 kB
  • ctags: 11,529
  • sloc: cpp: 96,162; ansic: 59,874; python: 242; sh: 189; makefile: 45
file content (35 lines) | stat: -rw-r--r-- 846 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
/*
 * EcoPDmtreeset.h
 *
 *  Created on: Nov 4, 2013
 *      Author: olga
 */

#ifndef ECOPDMTREESET_H_
#define ECOPDMTREESET_H_

#include "mtreeset.h"

class EcoPDmtreeset : public MTreeSet
{
public:
	EcoPDmtreeset();

	/**
		constructor, read trees from user file
		@param userTreeFile the name of the user trees
		@param is_rooted (IN/OUT) true if tree is rooted
		@param burnin the number of beginning trees to be discarded
		@param max_count max number of trees to load
	*/
	EcoPDmtreeset(const char *userTreeFile, bool &is_rooted, int burnin, int max_count,
		const char *tree_weight_file = NULL);

	void initEcoSD(const char *userTreeFile, bool &is_rooted, int burnin, int max_count,
		const char *tree_weight_file = NULL, IntVector *weights = NULL, bool compressed = false);


	virtual ~EcoPDmtreeset();
};

#endif /* ECOPDMTREESET_H_ */