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/***************************************************************************
* Copyright (C) 2006 by BUI Quang Minh, Steffen Klaere, Arndt von Haeseler *
* minh.bui@univie.ac.at *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#ifndef MSPLITSBLOCK_H
#define MSPLITSBLOCK_H
#include "ncl/ncl.h"
//#include "splitgraph.h"
class SplitGraph;
/**
SplitsBlock to read from nexus file
@author BUI Quang Minh, Steffen Klaere, Arndt von Haeseler
*/
class MSplitsBlock : public NxsBlock
{
public:
friend class SplitGraph;
friend class MTree;
/**
constructor, assigning an associated splits graph
@param asgraph a splits graph
*/
MSplitsBlock(SplitGraph *asgraph);
/**
destructor
*/
virtual ~MSplitsBlock();
/**
print info to an output stream
@param out output stream, cout for output to screen
*/
virtual void Report(ostream &out);
/**
reset the block
*/
virtual void Reset();
/**
parse a line containing split
@param token a token reader
*/
void AddSplit(NxsToken &token);
/**
@return cycle
*/
inline vector<int> &getCycle() {
return cycle;
}
protected:
/**
number of taxa
*/
int ntaxa;
/**
number of splits
*/
int nsplits;
/**
the associated splits graph
*/
SplitGraph *sgraph;
/**
taxa index around circle, if it is a circular split graph
*/
vector<int> cycle;
/**
main method to read block from file
@param token a token reader
*/
virtual void Read(NxsToken &token);
};
#endif
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