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/**
* PLL (version 1.0.0) a software library for phylogenetic inference
* Copyright (C) 2013 Tomas Flouri and Alexandros Stamatakis
*
* Derived from
* RAxML-HPC, a program for sequential and parallel estimation of phylogenetic
* trees by Alexandros Stamatakis
*
* This program is free software: you can redistribute it and/or modify it
* under the terms of the GNU General Public License as published by the Free
* Software Foundation, either version 3 of the License, or (at your option)
* any later version.
*
* This program is distributed in the hope that it will be useful, but WITHOUT
* ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
* FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for
* more details.
*
* You should have received a copy of the GNU General Public License along with
* this program. If not, see <http://www.gnu.org/licenses/>.
*
* For any other enquiries send an Email to Tomas Flouri
* Tomas.Flouri@h-its.org
*
* When publishing work that uses PLL please cite PLL
*
* @file part.h
*/
#ifndef __pll_PART__
#define __pll_PART__
#include "queue.h"
typedef struct
{
int start;
int end;
int stride;
} pllPartitionRegion;
typedef struct
{
char * partitionName;
char * partitionModel;
int protModels;
int protUseEmpiricalFreqs;
int dataType;
int ascBias;
int optimizeBaseFrequencies;
pllQueue * regionList;
} pllPartitionInfo;
#endif
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