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/*
* modelcodonsemiempirical.h
*
* Created on: May 29, 2013
* Author: minh
*/
#ifndef MODELCODONSEMIEMPIRICAL_H_
#define MODELCODONSEMIEMPIRICAL_H_
#include "modelcodonempirical.h"
#include "modelcodonparametric.h"
class ModelCodonSemiEmpirical: public ModelCodonEmpirical, public ModelCodonParametric {
public:
/**
constructor
@param model_name model name, e.g., GY,YN
@param freq state frequency type
@param tree associated phylogenetic tree
*/
ModelCodonSemiEmpirical(const char *model_name, string model_params, StateFreqType freq, string freq_params,
PhyloTree *tree, bool count_rates = true);
/**
* destructor
*/
virtual ~ModelCodonSemiEmpirical();
/**
initialization, called automatically by the constructor, no need to call it
@param model_name model name, e.g., JC, HKY.
@param freq state frequency type
*/
virtual void init(const char *model_name, string model_params, StateFreqType freq, string freq_params);
};
#endif /* MODELCODONSEMIEMPIRICAL_H_ */
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