1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
|
#ifndef __mem_alloc_h
#define __mem_alloc_h
#if defined WIN32 || defined _WIN32 || defined __WIN32__
#include <stdlib.h>
//#include <intrin.h>
#include <malloc.h>
//#include <windows.h>
#endif
#include <stddef.h>
#include <stdlib.h>
#ifdef __linux__
#include <malloc.h>
#endif
#include "pll.h"
#include <string.h>
#include <iqtree_config.h>
//#define rax_memalign memalign
//#define rax_malloc malloc
//#define rax_calloc calloc
//#define rax_realloc realloc
#if defined WIN32 || defined _WIN32 || defined __WIN32__
#if (defined(__MINGW32__) || defined(__clang__)) && defined(BINARY32)
#define rax_posix_memalign(ptr,alignment,size) *(ptr) = __mingw_aligned_malloc((size),(alignment))
#define rax_malloc(size) __mingw_aligned_malloc((size), PLL_BYTE_ALIGNMENT)
void *rax_calloc(size_t count, size_t size);
#define rax_free __mingw_aligned_free
#else
#define rax_posix_memalign(ptr,alignment,size) *(ptr) = _aligned_malloc((size),(alignment))
#define rax_malloc(size) _aligned_malloc((size), PLL_BYTE_ALIGNMENT)
void *rax_calloc(size_t count, size_t size);
#define rax_free _aligned_free
#endif
#else
#define rax_posix_memalign posix_memalign
#define rax_malloc malloc
#define rax_calloc calloc
#define rax_free free
#endif
//#define rax_malloc_aligned(x) memalign(PLL_BYTE_ALIGNMENT,x)
//void *rax_memalign(size_t align, size_t size);
//void *rax_malloc(size_t size);
//void *rax_realloc(void *p, size_t size);
//void rax_free(void *p);
//int rax_posix_memalign(void **p, size_t align, size_t size);
//void *rax_calloc(size_t n, size_t size);
//
//void *rax_malloc_aligned(size_t size);
/* for strndup stuff */
char *my_strndup(const char *s, size_t n);
#ifndef HAVE_STRTOK_R
char *strtok_r (char * s, const char * delim, char **save_ptr);
#endif
#if 0
// using the following contraption to trigger a compile-time error does not work on some gcc versions. It will trigger a confising linker error in the best case, so it is deativated.
#if defined(RAXML_USE_LLALLOC) && !defined(MEM_ALLOC_NO_GUARDS)
#define malloc(x) XXX_DONT_USE_MALLOC_WITHOUT_RAX_PREFIX_XXX
#define free(x) XXX_DONT_USE_FREE_WITHOUT_RAX_PREFIX_XXX
#define calloc(x,y) XXX_DONT_USE_CALLOC_WITHOUT_RAX_PREFIX_XXX
#define realloc(x,y) XXX_DONT_USE_REALLOC_WITHOUT_RAX_PREFIX_XXX
#define malloc_aligned(x) XXX_DONT_USE_MALLOC_ALIGNED_WITHOUT_RAX_PREFIX_XXX
#define posix_memalign(x,y,z) XXX_DONT_USE_POSIX_MEMALIGN_ALIGNED_WITHOUT_RAX_PREFIX_XXX
#endif
#endif
#endif
|
