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- | rw-r--r-- | 684 | CMakeLists.txt |
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- | rw-r--r-- | 15,458 | candidateset.cpp |
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- | rw-r--r-- | 11,207 | candidateset.h |
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- | rw-r--r-- | 7,120 | constrainttree.cpp |
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- | rw-r--r-- | 2,846 | constrainttree.h |
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- | rw-r--r-- | 155,754 | iqtree.cpp |
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- | rw-r--r-- | 31,402 | iqtree.h |
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- | rw-r--r-- | 7,325 | matree.cpp |
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- | rw-r--r-- | 4,278 | matree.h |
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- | rw-r--r-- | 8,197 | memslot.cpp |
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- | rw-r--r-- | 3,848 | memslot.h |
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- | rw-r--r-- | 13,436 | mexttree.cpp |
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- | rw-r--r-- | 5,474 | mexttree.h |
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- | rw-r--r-- | 77,146 | mtree.cpp |
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- | rw-r--r-- | 35,730 | mtree.h |
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- | rw-r--r-- | 23,826 | mtreeset.cpp |
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- | rw-r--r-- | 6,428 | mtreeset.h |
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- | rw-r--r-- | 8,828 | ncbitree.cpp |
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- | rw-r--r-- | 3,270 | ncbitree.h |
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- | rw-r--r-- | 7,964 | node.cpp |
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- | rw-r--r-- | 13,605 | node.h |
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- | rw-r--r-- | 25,938 | parstree.cpp |
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- | rw-r--r-- | 3,816 | parstree.h |
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- | rw-r--r-- | 69,335 | phylokernel.h |
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- | rw-r--r-- | 8,285 | phylokernelavx512.cpp |
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- | rw-r--r-- | 8,219 | phylokernelfma.cpp |
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- | rw-r--r-- | 40,346 | phylokernelmixrate.h |
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- | rw-r--r-- | 44,069 | phylokernelmixture.h |
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- | rw-r--r-- | 138,842 | phylokernelnew.h |
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- | rw-r--r-- | 34,546 | phylokernelnonrev.cpp |
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- | rw-r--r-- | 48,449 | phylokernelnonrev.h |
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- | rw-r--r-- | 68,403 | phylokernelsafe.h |
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- | rw-r--r-- | 26,815 | phylokernelsitemodel.cpp |
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- | rw-r--r-- | 30,531 | phylokernelsitemodel.h |
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- | rw-r--r-- | 8,252 | phylokernelsse.cpp |
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- | rw-r--r-- | 2,532 | phylonode.cpp |
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- | rw-r--r-- | 5,271 | phylonode.h |
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- | rw-r--r-- | 524 | phylonodemixlen.cpp |
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- | rw-r--r-- | 5,123 | phylonodemixlen.h |
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- | rw-r--r-- | 46,487 | phylosupertree.cpp |
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- | rw-r--r-- | 14,706 | phylosupertree.h |
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- | rw-r--r-- | 74,577 | phylosupertreeplen.cpp |
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- | rw-r--r-- | 10,138 | phylosupertreeplen.h |
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- | rw-r--r-- | 189,468 | phylotree.cpp |
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- | rw-r--r-- | 82,386 | phylotree.h |
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- | rw-r--r-- | 8,210 | phylotreeavx.cpp |
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- | rw-r--r-- | 130 | phylotreeeigen.cpp |
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- | rw-r--r-- | 29,344 | phylotreemixlen.cpp |
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- | rw-r--r-- | 7,725 | phylotreemixlen.h |
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- | rw-r--r-- | 21,834 | phylotreepars.cpp |
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- | rw-r--r-- | 74,837 | phylotreesse.cpp |
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- | rw-r--r-- | 80,214 | quartet.cpp |
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- | rw-r--r-- | 1,901 | supernode.cpp |
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- | rw-r--r-- | 3,015 | supernode.h |
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- | rw-r--r-- | 5,310 | tinatree.cpp |
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- | rw-r--r-- | 2,513 | tinatree.h |
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- | rw-r--r-- | 30,705 | upperbounds.cpp |
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- | rw-r--r-- | 2,988 | upperbounds.h |