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/***************************************************************************
* Copyright (C) 2009 by BUI Quang Minh *
* minh.bui@univie.ac.at *
* *
* This program is free software; you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation; either version 2 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the *
* Free Software Foundation, Inc., *
* 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA. *
***************************************************************************/
#ifndef WHTEST_H
#define WHTEST_H
int WHTest_run ( int argc, char **argv );
void WHT_setAlignmentSize(int ntax, int nsite);
void WHT_allocateMemory();
void WHT_setSequenceSite(int seqid, int siteid, char c);
void WHT_setSequenceName(int seqid, const char *name);
void WHT_setParams(int nsim, double gamma_shape, char *filename, double *dist);
void WHT_getResults(double *delta, double *delta_quantile, double *p_value);
#endif
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