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// Copyright (C) 1999-2003 Paul O. Lewis
//
// This file is part of NCL (Nexus Class Library) version 2.0.
//
// NCL is free software; you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation; either version 2 of the License, or
// (at your option) any later version.
//
// NCL is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with NCL; if not, write to the Free Software Foundation, Inc.,
// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
//
#ifndef NCL_ASSUMPTIONSBLOCK_H
#define NCL_ASSUMPTIONSBLOCK_H
/*----------------------------------------------------------------------------------------------------------------------
| This class handles reading and storage for the NxsReader block ASSUMPTIONS. It overrides the member functions Read
| and Reset, which are abstract virtual functions in the base class NxsBlock. Adding a new data member? Don't forget
| to:
|~
| o Describe it in the class declaration using a C-style comment.
| o Initialize it (unless it is self-initializing) in the constructor and re-initialize it in the Reset function.
| o Describe the initial state in the constructor documentation.
| o Delete memory allocated to it in both the destructor and Reset function.
| o Report it in some way in the Report function.
|~
*/
class NxsAssumptionsBlock
: public NxsBlock
{
public:
NxsAssumptionsBlock(NxsTaxaBlock *t);
virtual ~NxsAssumptionsBlock();
void ReplaceTaxaBlockPtr(NxsTaxaBlock *tb);
void SetCallback(NxsCharactersBlock *p);
int GetNumCharSets();
void GetCharSetNames(NxsStringVector &names);
NxsUnsignedSet &GetCharSet(NxsString nm);
NxsString GetDefCharSetName();
int GetNumTaxSets();
void GetTaxSetNames(NxsStringVector &names);
NxsUnsignedSet &GetTaxSet(NxsString nm);
NxsString GetDefTaxSetName();
int GetNumExSets();
void GetExSetNames(NxsStringVector &names);
NxsUnsignedSet &GetExSet(NxsString nm);
NxsString GetDefExSetName();
void ApplyExSet(NxsString nm);
virtual void Report(std::ostream& out);
virtual void Reset();
private:
NxsTaxaBlock *taxa; /* pointer to the NxsTaxaBlock object */
NxsCharactersBlock *charBlockPtr; /* pointer to the NxsCharactersBlock-derived object to be notified in the event of exset changes */
protected:
NxsUnsignedSetMap charsets; /* the variable storing charsets */
NxsUnsignedSetMap taxsets; /* the variable storing taxsets */
NxsUnsignedSetMap exsets; /* the variable storing exsets */
NxsString def_charset; /* the default charset */
NxsString def_taxset; /* the default taxset */
NxsString def_exset; /* the default exset */
protected:
void HandleCharset(NxsToken& token);
void HandleEndblock(NxsToken& token);
void HandleExset(NxsToken& token);
void HandleTaxset(NxsToken& token);
virtual void Read(NxsToken& token);
virtual unsigned TaxonLabelToNumber(NxsString s);
};
typedef NxsAssumptionsBlock AssumptionsBlock; // for backward compatibility
#endif
|
