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#set( CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Wall -msse3 -DRAXML_USE_LLALLOC -D_USE_PTHREADS -D_OPTIMIZED_FUNCTIONS -D__SIM_SSE3 -fno-builtin" )
#add_executable( raxml_light axml.c optimizeModel.c trash.c searchAlgo.c topologies.c treeIO.c models.c evaluatePartialGenericSpecial.c evaluateGenericSpecial.c newviewGenericSpecial.c makenewzGenericSpecial.c bipartitionList.c restartHashTable.c fastDNAparsimony.c randomTree.c lockless_allocator/ll_alloc.c mem_alloc.c recom.c)
#target_link_libraries( raxml_light m pthread )
if (NOT BINARY32 AND NOT IQTREE_FLAGS MATCHES "novx")
add_library(pllavx
avxLikelihood.c)
endif()
if (NOT IQTREE_FLAGS MATCHES "single")
add_library(pll
alignment.c
bipartitionList.c
evaluateGenericSpecial.c
evaluatePartialGenericSpecial.c
fastDNAparsimony.c
hardware.c
hash.c
lexer.c
makenewzGenericSpecial.c
models.c
newick.c
newviewGenericSpecial.c
genericParallelization.c
optimizeModel.c
parsePartition.c
queue.c
randomTree.c
recom.c
restartHashTable.c
searchAlgo.c
ssort.c
stack.c
topologies.c
trash.c
treeIO.c
utils.c)
else()
add_library(pll
alignment.c
bipartitionList.c
evaluateGenericSpecial.c
evaluatePartialGenericSpecial.c
fastDNAparsimony.c
hardware.c
hash.c
lexer.c
makenewzGenericSpecial.c
models.c
newick.c
newviewGenericSpecial.c
optimizeModel.c
parsePartition.c
queue.c
randomTree.c
recom.c
restartHashTable.c
searchAlgo.c
ssort.c
stack.c
topologies.c
trash.c
treeIO.c
utils.c)
endif()
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