1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
|
#include "ismrmrd/ismrmrd.h"
#include "ismrmrd/version.h"
#include <boost/test/unit_test.hpp>
using namespace ISMRMRD;
BOOST_AUTO_TEST_SUITE(AcquisitionsTest)
static void check_header(ISMRMRD_AcquisitionHeader* chead);
BOOST_AUTO_TEST_CASE(test_acquisition_header)
{
ISMRMRD_AcquisitionHeader chead;
// Check that header is of expected size
size_t expected_size = 9 * sizeof(uint16_t) +
(3 + ISMRMRD_PHYS_STAMPS) * sizeof(uint32_t) +
ISMRMRD_USER_INTS * sizeof(int32_t) +
(1 + ISMRMRD_CHANNEL_MASKS) * sizeof(uint64_t) +
((2 * ISMRMRD_POSITION_LENGTH) + (3 * ISMRMRD_DIRECTION_LENGTH) +
1 + ISMRMRD_USER_FLOATS) * sizeof(float) +
(9 + ISMRMRD_USER_INTS) * sizeof(uint16_t);
BOOST_CHECK_EQUAL(sizeof(chead), expected_size);
// Check that header is initialized properly
BOOST_CHECK_EQUAL(ismrmrd_init_acquisition_header(NULL), ISMRMRD_RUNTIMEERROR);
BOOST_CHECK_EQUAL(ismrmrd_init_acquisition_header(&chead), ISMRMRD_NOERROR);
check_header(&chead);
}
BOOST_AUTO_TEST_CASE(test_acquisition_init_cleanup)
{
ISMRMRD_Acquisition acq;
// Check initialization of acquisition
BOOST_CHECK_EQUAL(ismrmrd_init_acquisition(NULL), ISMRMRD_RUNTIMEERROR);
BOOST_CHECK_EQUAL(ismrmrd_init_acquisition(&acq), ISMRMRD_NOERROR);
BOOST_CHECK(!acq.traj);
BOOST_CHECK(!acq.data);
// Check cleanup of acquisition
BOOST_CHECK_EQUAL(ismrmrd_cleanup_acquisition(NULL), ISMRMRD_RUNTIMEERROR);
BOOST_CHECK_EQUAL(ismrmrd_cleanup_acquisition(&acq), ISMRMRD_NOERROR);
BOOST_CHECK(!acq.traj);
BOOST_CHECK(!acq.data);
}
BOOST_AUTO_TEST_CASE(test_acquisition_create_free)
{
ISMRMRD_Acquisition* cacqp = NULL;
// Check creation of new acquisition
BOOST_CHECK(cacqp = ismrmrd_create_acquisition());
// Check that it's initialized
check_header(&cacqp->head);
BOOST_CHECK(!cacqp->traj);
BOOST_CHECK(!cacqp->data);
// Check cleanup
BOOST_CHECK_EQUAL(ismrmrd_free_acquisition(NULL), ISMRMRD_RUNTIMEERROR);
BOOST_CHECK_EQUAL(ismrmrd_free_acquisition(cacqp), ISMRMRD_NOERROR);
}
BOOST_AUTO_TEST_CASE(test_acquisition_copy)
{
// Weak check of acquisition copying
ISMRMRD_Acquisition csrc, cdst;
BOOST_CHECK_EQUAL(ismrmrd_init_acquisition(&csrc), ISMRMRD_NOERROR);
// TODO: it is necessary to call init_acquisition on the destination acquisition
// before copying, in case its traj or data are non-NULL!
BOOST_CHECK_EQUAL(ismrmrd_init_acquisition(&cdst), ISMRMRD_NOERROR);
BOOST_CHECK_EQUAL(ismrmrd_copy_acquisition(&cdst, NULL), ISMRMRD_RUNTIMEERROR);
BOOST_CHECK_EQUAL(ismrmrd_copy_acquisition(NULL, &csrc), ISMRMRD_RUNTIMEERROR);
BOOST_CHECK_EQUAL(ismrmrd_copy_acquisition(NULL, NULL), ISMRMRD_RUNTIMEERROR);
BOOST_CHECK_EQUAL(ismrmrd_copy_acquisition(&cdst, &csrc), ISMRMRD_NOERROR);
check_header(&cdst.head);
BOOST_CHECK_EQUAL(ismrmrd_size_of_acquisition_data(&cdst), 0);
BOOST_CHECK(!cdst.traj);
BOOST_CHECK(!cdst.data);
}
BOOST_AUTO_TEST_CASE(test_acquisition_make_consistent)
{
ISMRMRD_Acquisition acq;
BOOST_CHECK_EQUAL(ismrmrd_init_acquisition(&acq), ISMRMRD_NOERROR);
BOOST_CHECK_EQUAL(ismrmrd_make_consistent_acquisition(NULL), ISMRMRD_RUNTIMEERROR);
uint16_t nsamples = 512;
uint16_t nchannels = 8;
uint16_t ntrajd = 2;
acq.head.number_of_samples = nsamples;
acq.head.active_channels = nchannels;
acq.head.trajectory_dimensions = ntrajd;
BOOST_CHECK_EQUAL(ismrmrd_size_of_acquisition_traj(&acq), nsamples * ntrajd * sizeof(*acq.traj));
BOOST_CHECK_EQUAL(ismrmrd_size_of_acquisition_data(&acq), nsamples * nchannels * sizeof(*acq.data));
BOOST_CHECK_EQUAL(ismrmrd_make_consistent_acquisition(&acq), ISMRMRD_NOERROR);
BOOST_CHECK_EQUAL(acq.head.available_channels, nchannels);
// check that traj and data were allocated
BOOST_CHECK(acq.traj);
BOOST_CHECK(acq.data);
ismrmrd_cleanup_acquisition(&acq);
}
static void check_header(ISMRMRD_AcquisitionHeader* chead)
{
BOOST_CHECK_EQUAL(chead->version, ISMRMRD_VERSION_MAJOR);
BOOST_CHECK_EQUAL(chead->number_of_samples, 0);
BOOST_CHECK_EQUAL(chead->available_channels, 1);
BOOST_CHECK_EQUAL(chead->active_channels, 1);
BOOST_CHECK_EQUAL(chead->flags, 0);
BOOST_CHECK_EQUAL(chead->measurement_uid, 0);
BOOST_CHECK_EQUAL(chead->scan_counter, 0);
BOOST_CHECK_EQUAL(chead->acquisition_time_stamp, 0);
for (int idx = 0; idx < ISMRMRD_PHYS_STAMPS; idx++) {
BOOST_CHECK_EQUAL(chead->physiology_time_stamp[idx], 0);
}
for (int idx = 0; idx < ISMRMRD_CHANNEL_MASKS; idx++) {
BOOST_CHECK_EQUAL(chead->channel_mask[idx], 0);
}
BOOST_CHECK_EQUAL(chead->discard_pre, 0);
BOOST_CHECK_EQUAL(chead->discard_post, 0);
BOOST_CHECK_EQUAL(chead->center_sample, 0);
BOOST_CHECK_EQUAL(chead->encoding_space_ref, 0);
BOOST_CHECK_EQUAL(chead->trajectory_dimensions, 0);
BOOST_CHECK_EQUAL(chead->sample_time_us, 0);
for (int idx = 0; idx < ISMRMRD_POSITION_LENGTH; idx++) {
BOOST_CHECK_EQUAL(chead->position[idx], 0);
}
for (int idx = 0; idx < ISMRMRD_DIRECTION_LENGTH; idx++) {
BOOST_CHECK_EQUAL(chead->read_dir[idx], 0);
}
for (int idx = 0; idx < ISMRMRD_DIRECTION_LENGTH; idx++) {
BOOST_CHECK_EQUAL(chead->phase_dir[idx], 0);
}
for (int idx = 0; idx < ISMRMRD_DIRECTION_LENGTH; idx++) {
BOOST_CHECK_EQUAL(chead->slice_dir[idx], 0);
}
for (int idx = 0; idx < ISMRMRD_POSITION_LENGTH; idx++) {
BOOST_CHECK_EQUAL(chead->patient_table_position[idx], 0);
}
// EncodingCounters
BOOST_CHECK_EQUAL(chead->idx.kspace_encode_step_1, 0);
BOOST_CHECK_EQUAL(chead->idx.kspace_encode_step_2, 0);
BOOST_CHECK_EQUAL(chead->idx.average, 0);
BOOST_CHECK_EQUAL(chead->idx.slice, 0);
BOOST_CHECK_EQUAL(chead->idx.contrast, 0);
BOOST_CHECK_EQUAL(chead->idx.phase, 0);
BOOST_CHECK_EQUAL(chead->idx.repetition, 0);
BOOST_CHECK_EQUAL(chead->idx.set, 0);
BOOST_CHECK_EQUAL(chead->idx.segment, 0);
for (int idx = 0; idx < ISMRMRD_USER_INTS; idx++) {
BOOST_CHECK_EQUAL(chead->idx.user[idx], 0);
}
for (int idx = 0; idx < ISMRMRD_USER_INTS; idx++) {
BOOST_CHECK_EQUAL(chead->user_int[idx], 0);
}
for (int idx = 0; idx < ISMRMRD_USER_FLOATS; idx++) {
BOOST_CHECK_EQUAL(chead->user_float[idx], 0);
}
}
BOOST_AUTO_TEST_SUITE_END()
|
