File: fasta.py

package info (click to toggle)
isospec 2.3.2-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 12,476 kB
  • sloc: cpp: 9,530; python: 2,095; makefile: 180; ansic: 100; sh: 88
file content (14 lines) | stat: -rw-r--r-- 547 bytes parent folder | download | duplicates (4) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
 
from IsoSpecPy.IsoSpecPy import IsoTotalProb

# isotopic distribution of protein with fasta sequence AAAPPGQAAC
MZI_opt = IsoTotalProb(.999,
                       fasta='AAAPPGQAAC')

# isotopic distribution of protein with fasta sequence AAAPPGQAAC,
# with thioglycinie modification
MZI_opt2 = IsoTotalProb(.999,
                        formula='O-1S1',
                        fasta='AAAPPGQAAC')
print("Masses and probabilities in AAAPPGQAAC with thioglycine modification:")
print([(m, p) for (m, p) in zip(MZI_opt2.masses, MZI_opt2.probs)])