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#include "ImageIODelegates.h"
#include "GuidedNativeImageIO.h"
#include "IRISApplication.h"
#include "GenericImageData.h"
#include "HistoryManager.h"
#include "IRISImageData.h"
/* =============================
Abstract Classes
============================= */
void LoadAnatomicImageDelegate
::ValidateHeader(GuidedNativeImageIO *io, IRISWarningList &wl)
{
typedef itk::ImageIOBase IOB;
IOB::IOComponentType ct = io->GetComponentTypeInNativeImage();
if(ct > IOB::SHORT)
{
wl.push_back(
IRISWarning(
"Warning: Loss of Precision."
"You are opening an image with 32-bit or greater precision, "
"but ITK-SNAP only provides 16-bit precision. "
"Intensity values reported in ITK-SNAP may differ slightly from the "
"actual values in the image."
));
}
}
/* =============================
MAIN Image
============================= */
void
LoadMainImageDelegate
::UnloadCurrentImage()
{
m_Driver->UnloadMainImage();
}
ImageWrapperBase *LoadMainImageDelegate::UpdateApplicationWithImage(GuidedNativeImageIO *io)
{
// Update the IRIS driver
m_Driver->UpdateIRISMainImage(io, this->GetMetaDataRegistry());
// Return the main image
return m_Driver->GetIRISImageData()->GetMain();
}
LoadMainImageDelegate::LoadMainImageDelegate()
{
this->m_HistoryName = "AnatomicImage";
this->m_DisplayName = "Main Image";
}
/* =============================
OVERLAY Image
============================= */
void
LoadOverlayImageDelegate
::UnloadCurrentImage()
{
// TODO: what do we do here? Are we always adding an overlay? What about
// on an undo in a wizard?
}
ImageWrapperBase *LoadOverlayImageDelegate::UpdateApplicationWithImage(GuidedNativeImageIO *io)
{
// Load the overlay
m_Driver->AddIRISOverlayImage(io, this->GetMetaDataRegistry());
// Return it
return m_Driver->GetIRISImageData()->GetLastOverlay();
}
void
LoadOverlayImageDelegate
::ValidateHeader(GuidedNativeImageIO *io, IRISWarningList &wl)
{
// Do the parent's check
LoadAnatomicImageDelegate::ValidateHeader(io, wl);
// The check below is commented out because we no longer require the overlays
// to be in the same space as the main image
/*
// Now check for dimensions mismatch
GenericImageData *id = m_Driver->GetCurrentImageData();
// Check the dimensions, throw exception
Vector3ui szSeg = io->GetDimensionsOfNativeImage();
Vector3ui szMain = id->GetMain()->GetSize();
if(szSeg != szMain)
{
throw IRISException("Error: Mismatched Dimensions. "
"The size of the overlay image (%d x %d x %d) "
"does not match the size of the main image "
"(%d x %d x %d). Images must have the same dimensions.",
szSeg[0], szSeg[1], szSeg[2],
szMain[0], szMain[1], szMain[2]);
}
*/
}
LoadOverlayImageDelegate::LoadOverlayImageDelegate()
{
this->m_HistoryName = "AnatomicImage";
this->m_DisplayName = "Additional Image";
}
/* =============================
SEGMENTATION Image
============================= */
void
LoadSegmentationImageDelegate
::ValidateHeader(GuidedNativeImageIO *io, IRISWarningList &wl)
{
GenericImageData *id = m_Driver->GetCurrentImageData();
// Check the dimensions, throw exception
Vector3ui szSeg = io->GetDimensionsOfNativeImage();
Vector3ui szMain = id->GetMain()->GetSize();
if(szSeg != szMain)
{
throw IRISException("Error: Mismatched Dimensions. "
"The size of the segmentation image (%d x %d x %d) "
"does not match the size of the main image "
"(%d x %d x %d). Images must have the same dimensions.",
szSeg[0], szSeg[1], szSeg[2],
szMain[0], szMain[1], szMain[2]);
}
// Check the number of components
if(io->GetNumberOfComponentsInNativeImage() != 1)
{
throw IRISException("Error: Multicomponent Image. "
"The segmentation image has multiple (%d) components, "
"but only one component is supported by ITK-SNAP.",
io->GetNumberOfComponentsInNativeImage());
}
}
void
LoadSegmentationImageDelegate
::ValidateImage(GuidedNativeImageIO *io, IRISWarningList &wl)
{
// Get the two images to compare
GenericImageData *id = m_Driver->GetCurrentImageData();
itk::ImageBase<3> *main = id->GetMain()->GetImageBase();
itk::ImageBase<3> *native = io->GetNativeImage();
// Check the header properties
// Check if there is a discrepancy in the header fields. This will not
// preclude the user from loading the image, but it will generate a
// warning, hopefully leading users to adopt more flexible file formats
bool match_spacing = true, match_origin = true, match_direction = true;
for(unsigned int i = 0; i < 3; i++)
{
if(main->GetSpacing()[i] != native->GetSpacing()[i])
match_spacing = false;
if(main->GetOrigin()[i] != native->GetOrigin()[i])
match_origin = false;
for(size_t j = 0; j < 3; j++)
{
double diff = fabs(main->GetDirection()(i,j) - native->GetDirection()(i,j));
if(diff > 1.0e-4)
match_direction = false;
}
}
if(!match_spacing || !match_origin || !match_direction)
{
// Come up with a warning message
std::string object, verb;
if(!match_spacing && !match_origin && !match_direction)
{ object = "spacing, origin and orientation"; }
else if (!match_spacing && !match_origin)
{ object = "spacing and origin"; }
else if (!match_spacing && !match_direction)
{ object = "spacing and orientation"; }
else if (!match_origin && !match_direction)
{ object = "origin and orientation";}
else if (!match_spacing)
{ object = "spacing"; }
else if (!match_direction)
{ object = "orientation";}
else if (!match_origin)
{ object = "origin"; }
// Create an alert box
wl.push_back(IRISWarning(
"Warning: Header Mismatch."
"There is a mismatch between the header of the image that you are "
"loading and the header of the main image currently open in ITK-SNAP. "
"The images have different %s. "
"ITK-SNAP will ignore the header in the image you are loading.",
object.c_str()));
}
}
ImageWrapperBase *LoadSegmentationImageDelegate::UpdateApplicationWithImage(GuidedNativeImageIO *io)
{
if(m_Driver->IsSnakeModeActive())
m_Driver->UpdateSNAPSegmentationImage(io);
else
m_Driver->UpdateIRISSegmentationImage(io);
return m_Driver->GetCurrentImageData()->GetSegmentation();
}
LoadSegmentationImageDelegate::LoadSegmentationImageDelegate()
{
this->m_HistoryName = "LabelImage";
this->m_DisplayName = "Segmentation Image";
}
void
LoadSegmentationImageDelegate
::UnloadCurrentImage()
{
// It is unnecessary to unload the current segmentation image, because that
// just will reinitialize it with zeros. It's safe to just do nothing.
}
void
DefaultSaveImageDelegate::Initialize(
IRISApplication *driver,
ImageWrapperBase *wrapper,
const std::string &histname,
bool trackInLocalHistory)
{
AbstractSaveImageDelegate::Initialize(driver);
m_Wrapper = wrapper;
m_Track = trackInLocalHistory;
this->AddHistoryName(histname);
}
void DefaultSaveImageDelegate::AddHistoryName(const std::string &histname)
{
m_HistoryNames.push_back(histname);
}
const char *DefaultSaveImageDelegate::GetHistoryName()
{
return m_HistoryNames.front().c_str();
}
void DefaultSaveImageDelegate
::SaveImage(const std::string &fname, GuidedNativeImageIO *io,
Registry ®, IRISWarningList &wl)
{
try
{
m_SaveSuccessful = false;
m_Wrapper->WriteToFile(fname.c_str(), reg);
m_SaveSuccessful = true;
m_Wrapper->SetFileName(fname);
for(std::list<std::string>::const_iterator it = m_HistoryNames.begin();
it != m_HistoryNames.end(); ++it)
{
m_Driver->GetHistoryManager()->UpdateHistory(*it, fname, m_Track);
}
}
catch(std::exception &exc)
{
throw exc;
}
}
const char *DefaultSaveImageDelegate::GetCurrentFilename()
{
return m_Wrapper->GetFileName();
}
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