1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019 1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033 1034 1035 1036 1037 1038 1039 1040 1041 1042 1043
|
#include "DisplayMappingPolicy.h"
#include "ImageWrapperTraits.h"
#include "ColorLabelTable.h"
#include "LabelToRGBAFilter.h"
#include "IntensityCurveVTK.h"
#include "IntensityToColorLookupTableImageFilter.h"
#include "LookupTableIntensityMappingFilter.h"
#include "RGBALookupTableIntensityMappingFilter.h"
#include "ColorMap.h"
#include "ScalarImageHistogram.h"
#include "itkMinimumMaximumImageFilter.h"
#include "itkVectorImageToImageAdaptor.h"
#include "IRISException.h"
#include "itkCommand.h"
#include "itkUnaryFunctorImageFilter.h"
#include "InputSelectionImageFilter.h"
#include "Rebroadcaster.h"
/* ===============================================================
ColorLabelTableDisplayMappingPolicy implementation
=============================================================== */
template<class TWrapperTraits>
ColorLabelTableDisplayMappingPolicy<TWrapperTraits>
::ColorLabelTableDisplayMappingPolicy()
{
m_Wrapper = NULL;
}
template<class TWrapperTraits>
ColorLabelTableDisplayMappingPolicy<TWrapperTraits>
::~ColorLabelTableDisplayMappingPolicy()
{
}
template<class TWrapperTraits>
void
ColorLabelTableDisplayMappingPolicy<TWrapperTraits>
::Initialize(WrapperType *wrapper)
{
// Initialize the wrapper
m_Wrapper = wrapper;
// Initialize the filters
for(unsigned int i=0; i<3; i++)
{
m_RGBAFilter[i] = RGBAFilterType::New();
m_RGBAFilter[i]->SetInput(wrapper->GetSlice(i));
m_RGBAFilter[i]->SetColorTable(NULL);
}
}
template <class TWrapperTraits>
void
ColorLabelTableDisplayMappingPolicy<TWrapperTraits>
::UpdateImagePointer(ImageType *image)
{
// Nothing to do here, since we are connected to the slices?
}
template<class TWrapperTraits>
typename ColorLabelTableDisplayMappingPolicy<TWrapperTraits>::DisplaySlicePointer
ColorLabelTableDisplayMappingPolicy<TWrapperTraits>
::GetDisplaySlice(unsigned int slice)
{
return m_RGBAFilter[slice]->GetOutput();
}
template<class TWrapperTraits>
typename ColorLabelTableDisplayMappingPolicy<TWrapperTraits>::DisplayPixelType
ColorLabelTableDisplayMappingPolicy<TWrapperTraits>
::MapPixel(const InputPixelType &val)
{
DisplayPixelType pix;
ColorLabelTable *table = this->m_RGBAFilter[0]->GetColorTable();
table->GetColorLabel(val).GetRGBAVector(pix.GetDataPointer());
return pix;
}
template<class TWrapperTraits>
void
ColorLabelTableDisplayMappingPolicy<TWrapperTraits>
::SetLabelColorTable(ColorLabelTable *labels)
{
// Set the new table
for(unsigned int i=0;i<3;i++)
m_RGBAFilter[i]->SetColorTable(labels);
// Propagate the events from to color label table to the wrapper
Rebroadcaster::Rebroadcast(labels, SegmentationLabelChangeEvent(),
m_Wrapper, WrapperDisplayMappingChangeEvent());
Rebroadcaster::Rebroadcast(labels, SegmentationLabelConfigurationChangeEvent(),
m_Wrapper, WrapperDisplayMappingChangeEvent());
}
template<class TWrapperTraits>
ColorLabelTable *
ColorLabelTableDisplayMappingPolicy<TWrapperTraits>
::GetLabelColorTable() const
{
return m_RGBAFilter[0]->GetColorTable();
}
/* ===============================================================
CachingCurveAndColorMapDisplayMappingPolicy implementation
=============================================================== */
template<class TWrapperTraits>
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::CachingCurveAndColorMapDisplayMappingPolicy()
{
m_Wrapper = NULL;
}
template<class TWrapperTraits>
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::~CachingCurveAndColorMapDisplayMappingPolicy()
{
}
template<class TWrapperTraits>
void
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::Initialize(WrapperType *wrapper)
{
// Initialize the intensity curve
m_Wrapper = wrapper;
// Initialize the LUT filter
m_LookupTableFilter = LookupTableFilterType::New();
// Initialize the colormap
m_ColorMap = ColorMap::New();
m_ColorMap->SetToSystemPreset(
static_cast<ColorMap::SystemPreset>(TWrapperTraits::DefaultColorMap));
this->SetColorMap(m_ColorMap);
// Initialize the intensity curve
m_IntensityCurveVTK = IntensityCurveVTK::New();
m_IntensityCurveVTK->Initialize();
this->SetIntensityCurve(m_IntensityCurveVTK);
// Initialize the filters that apply the LUT
for(unsigned int i=0; i<3; i++)
{
m_IntensityFilter[i] = IntensityFilterType::New();
m_IntensityFilter[i]->SetLookupTable(m_LookupTableFilter->GetOutput());
}
}
template <class TWrapperTraits>
void
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::UpdateImagePointer(ImageType *image)
{
// Hook up the image to the filter
m_LookupTableFilter->SetInput(m_Wrapper->GetImage());
// Hook up the min/max filters
m_LookupTableFilter->SetImageMinInput(m_Wrapper->GetMinMaxFilter()->GetMinimumOutput());
m_LookupTableFilter->SetImageMaxInput(m_Wrapper->GetMinMaxFilter()->GetMaximumOutput());
for(unsigned int i=0; i<3; i++)
{
m_IntensityFilter[i]->SetInput(m_Wrapper->GetSlice(i));
m_IntensityFilter[i]->SetImageMinInput(m_Wrapper->GetMinMaxFilter()->GetMinimumOutput());
m_IntensityFilter[i]->SetImageMaxInput(m_Wrapper->GetMinMaxFilter()->GetMaximumOutput());
}
}
template<class TWrapperTraits>
void
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::CopyDisplayPipeline(const Self *reference)
{
// Copy the lookup table filter. Not sure we need to do this, or just set
// it to NULL.
m_LookupTableFilter = reference->m_LookupTableFilter;
// Configure the per-slice filters
for(unsigned int i=0; i<3; i++)
{
m_IntensityFilter[i]->SetLookupTable(m_LookupTableFilter->GetOutput());
m_IntensityFilter[i]->SetImageMinInput(m_LookupTableFilter->GetImageMinInput());
m_IntensityFilter[i]->SetImageMaxInput(m_LookupTableFilter->GetImageMaxInput());
}
// Copy the color map and the intensity curve
this->SetColorMap(reference->m_ColorMap);
this->SetIntensityCurve(reference->m_IntensityCurveVTK);
}
template<class TWrapperTraits>
void
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::SetReferenceIntensityRange(ComponentObjectType *refMin, ComponentObjectType *refMax)
{
m_LookupTableFilter->SetImageMinInput(refMin);
m_LookupTableFilter->SetImageMaxInput(refMax);
}
template<class TWrapperTraits>
void
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::ClearReferenceIntensityRange()
{
m_LookupTableFilter->SetImageMinInput(m_Wrapper->GetMinMaxFilter()->GetMinimumOutput());
m_LookupTableFilter->SetImageMaxInput(m_Wrapper->GetMinMaxFilter()->GetMaximumOutput());
}
template<class TWrapperTraits>
void
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::DeepCopyIntensityMap(WrapperType *srcWrapper)
{
Self *s = srcWrapper->GetDisplayMapping();
const IntensityCurveInterface *ici = s->m_IntensityCurveVTK;
m_IntensityCurveVTK->Initialize(ici->GetControlPointCount());
for(size_t i = 0; i < m_IntensityCurveVTK->GetControlPointCount(); i++)
{
float t, x;
ici->GetControlPoint(i, t, x);
m_IntensityCurveVTK->UpdateControlPoint(i, t, x);
}
}
template<class TWrapperTraits>
Vector2d
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::GetNativeImageRangeForCurve()
{
return Vector2d(m_Wrapper->GetImageMinNative(), m_Wrapper->GetImageMaxNative());
}
template<class TWrapperTraits>
const ScalarImageHistogram *
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::GetHistogram(int nBins)
{
return m_Wrapper->GetHistogram(nBins);
}
template<class TWrapperTraits>
typename CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>::DisplaySlicePointer
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::GetDisplaySlice(unsigned int dim)
{
return m_IntensityFilter[dim]->GetOutput();
}
template<class TWrapperTraits>
ColorMap *
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::GetColorMap() const
{
return m_ColorMap;
}
template<class TWrapperTraits>
IntensityCurveInterface *
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::GetIntensityCurve() const
{
return m_IntensityCurveVTK;
}
template<class TWrapperTraits>
void
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::SetIntensityCurve(IntensityCurveInterface *curve)
{
m_IntensityCurveVTK = static_cast<IntensityCurveVTK *>(curve);
// Connect the curve to the LUT filter
m_LookupTableFilter->SetIntensityCurve(m_IntensityCurveVTK);
// Connect modified events from the color map to appropriate events
// from the image wrapper
Rebroadcaster::Rebroadcast(m_IntensityCurveVTK, itk::ModifiedEvent(),
m_Wrapper, WrapperDisplayMappingChangeEvent());
}
template<class TWrapperTraits>
void
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::SetColorMap(ColorMap *map)
{
m_ColorMap = map;
// Attach the color map to the LUT filter
m_LookupTableFilter->SetColorMap(m_ColorMap);
// Connect modified events from the color map to appropriate events
// from the image wrapper
Rebroadcaster::Rebroadcast(m_ColorMap, itk::ModifiedEvent(),
m_Wrapper, WrapperDisplayMappingChangeEvent());
}
template<class TWrapperTraits>
void
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::Save(Registry ®)
{
m_IntensityCurveVTK->SaveToRegistry(reg.Folder("Curve"));
m_ColorMap->SaveToRegistry(reg.Folder("ColorMap"));
}
template<class TWrapperTraits>
void
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::Restore(Registry ®)
{
m_IntensityCurveVTK->LoadFromRegistry(reg.Folder("Curve"));
m_ColorMap->LoadFromRegistry(reg.Folder("ColorMap"));
}
template<class TWrapperTraits>
typename CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>::DisplayPixelType
CachingCurveAndColorMapDisplayMappingPolicy<TWrapperTraits>
::MapPixel(const PixelType &val)
{
DisplayPixelType pix = m_IntensityFilter[0]->MapPixel(val);
return pix;
}
/* ===============================================================
AbstractContinuousImageDisplayMappingPolicy implementation
=============================================================== */
void
AbstractContinuousImageDisplayMappingPolicy
::AutoFitContrast()
{
// Get the histogram with the current number of bins
const ScalarImageHistogram *hist = this->GetHistogram(0);
// Integrate the histogram until reaching 0.1%
double imin = hist->GetBinMin(0);
double ilow = imin;
size_t accum = 0;
size_t accum_goal = hist->GetTotalSamples() / 1000;
for(size_t i = 0; i < hist->GetSize(); i++)
{
if(accum + hist->GetFrequency(i) < accum_goal)
{
accum += hist->GetFrequency(i);
ilow = hist->GetBinMax(i);
}
else break;
}
// Same, but from above
double imax = hist->GetBinMax(hist->GetSize() - 1);
double ihigh = imax;
accum = 0;
for(int i = (int) hist->GetSize() - 1; i >= 0; i--)
{
if(accum + hist->GetFrequency(i) < accum_goal)
{
accum += hist->GetFrequency(i);
ihigh = hist->GetBinMin(i);
}
else break;
}
// If for some reason the window is off, we set everything to max/min
if(ilow >= ihigh)
{ ilow = imin; ihigh = imax; }
// Compute the unit coordinate values that correspond to min and max
Vector2d irange = this->GetNativeImageRangeForCurve();
double factor = 1.0 / (irange[1] - irange[0]);
double t0 = factor * (ilow - irange[0]);
double t1 = factor * (ihigh - irange[0]);
// Set the window and level
this->GetIntensityCurve()->ScaleControlPointsToWindow((float) t0, (float) t1);
}
bool AbstractContinuousImageDisplayMappingPolicy::IsContrastInDefaultState()
{
return this->GetIntensityCurve()->IsInDefaultState();
}
/* ===============================================================
LinearColorMapDisplayMappingPolicy implementation
=============================================================== */
template <class TWrapperTraits>
LinearColorMapDisplayMappingPolicy<TWrapperTraits>
::LinearColorMapDisplayMappingPolicy()
{
m_ColorMap = ColorMap::New();
m_ColorMap->SetToSystemPreset(
static_cast<ColorMap::SystemPreset>(TWrapperTraits::DefaultColorMap));
m_Wrapper = NULL;
// Initialize the functor - based on the hard-coded range of the
// intensity values encoded in the traits
float imin, imax;
TWrapperTraits::GetFixedIntensityRange(imin, imax);
m_Functor.m_Shift = imin;
m_Functor.m_Scale = 1.0 / (imax - imin);
m_Functor.m_ColorMap = m_ColorMap;
for(int i = 0; i < 3; i++)
{
m_Filter[i] = IntensityFilterType::New();
m_Filter[i]->SetFunctor(m_Functor);
// The color map is added as a 'named' input of the filter. This ensures
// that as the colormap is modified, the filter will be updated
m_Filter[i]->SetInput("colormap", m_ColorMap);
}
}
template <class TWrapperTraits>
LinearColorMapDisplayMappingPolicy<TWrapperTraits>
::~LinearColorMapDisplayMappingPolicy()
{
}
template <class TWrapperTraits>
void
LinearColorMapDisplayMappingPolicy<TWrapperTraits>
::Initialize(WrapperType *wrapper)
{
m_Wrapper = wrapper;
for(int i = 0; i < 3; i++)
{
m_Filter[i]->SetInput(wrapper->GetSlice(i));
}
Rebroadcaster::Rebroadcast(m_ColorMap, itk::ModifiedEvent(),
m_Wrapper, WrapperDisplayMappingChangeEvent());
}
template <class TWrapperTraits>
void
LinearColorMapDisplayMappingPolicy<TWrapperTraits>
::UpdateImagePointer(ImageType *image)
{
// Nothing to do here, since we are connected to the slices?
}
template <class TWrapperTraits>
typename LinearColorMapDisplayMappingPolicy<TWrapperTraits>::DisplaySlicePointer
LinearColorMapDisplayMappingPolicy<TWrapperTraits>
::GetDisplaySlice(unsigned int slice)
{
return m_Filter[slice]->GetOutput();
}
template <class TWrapperTraits>
inline typename LinearColorMapDisplayMappingPolicy<TWrapperTraits>::DisplayPixelType
LinearColorMapDisplayMappingPolicy<TWrapperTraits>::MappingFunctor
::operator()(PixelType in)
{
double v = (in - m_Shift) * m_Scale;
return m_ColorMap->MapIndexToRGBA(v);
}
template <class TWrapperTraits>
bool
LinearColorMapDisplayMappingPolicy<TWrapperTraits>::MappingFunctor
::operator!=(const MappingFunctor &comp)
{
return (comp.m_ColorMap != m_ColorMap)
|| (comp.m_Shift != m_Shift)
|| (comp.m_Scale != m_Scale);
}
template <class TWrapperTraits>
void
LinearColorMapDisplayMappingPolicy<TWrapperTraits>
::Save(Registry ®)
{
m_ColorMap->SaveToRegistry(reg.Folder("ColorMap"));
}
template <class TWrapperTraits>
void
LinearColorMapDisplayMappingPolicy<TWrapperTraits>
::Restore(Registry ®)
{
m_ColorMap->LoadFromRegistry(reg.Folder("ColorMap"));
}
template<class TWrapperTraits>
typename LinearColorMapDisplayMappingPolicy<TWrapperTraits>::DisplayPixelType
LinearColorMapDisplayMappingPolicy<TWrapperTraits>
::MapPixel(const PixelType &val)
{
DisplayPixelType pix = m_Functor(val);
return pix;
}
/* ===============================================================
MultiChannelDisplayMode implementation
=============================================================== */
MultiChannelDisplayMode::MultiChannelDisplayMode()
{
UseRGB = false;
RenderAsGrid = false;
SelectedScalarRep = SCALAR_REP_COMPONENT;
SelectedComponent = 0;
}
MultiChannelDisplayMode::MultiChannelDisplayMode(
bool use_rgb, bool render_as_grid,
ScalarRepresentation rep,
int comp)
: UseRGB(use_rgb), RenderAsGrid(render_as_grid),
SelectedScalarRep(rep), SelectedComponent(comp)
{
}
MultiChannelDisplayMode::MultiChannelDisplayMode(int value)
{
UseRGB = false;
RenderAsGrid = false;
SelectedScalarRep = SCALAR_REP_COMPONENT;
SelectedComponent = 0;
}
MultiChannelDisplayMode
MultiChannelDisplayMode::DefaultForRGB()
{
MultiChannelDisplayMode mode;
mode.UseRGB = true;
return mode;
}
void MultiChannelDisplayMode::Save(Registry ®)
{
reg["UseRGB"] << UseRGB;
reg["RenderAsGrid"] << RenderAsGrid;
reg["SelectedScalarRep"].PutEnum(GetScalarRepNames(), SelectedScalarRep);
reg["SelectedComponent"] << SelectedComponent;
}
MultiChannelDisplayMode
MultiChannelDisplayMode::Load(Registry ®)
{
MultiChannelDisplayMode mode;
mode.UseRGB = reg["UseRGB"][mode.UseRGB];
mode.RenderAsGrid = reg["RenderAsGrid"][mode.RenderAsGrid];
mode.SelectedScalarRep = reg["SelectedScalarRep"].GetEnum(
GetScalarRepNames(), mode.SelectedScalarRep);
mode.SelectedComponent = reg["SelectedComponent"][mode.SelectedComponent];
return mode;
}
RegistryEnumMap<ScalarRepresentation> &
MultiChannelDisplayMode::GetScalarRepNames()
{
static RegistryEnumMap<ScalarRepresentation> namemap;
if(namemap.Size() == 0)
{
namemap.AddPair(SCALAR_REP_COMPONENT, "Component");
namemap.AddPair(SCALAR_REP_MAGNITUDE, "Magnitude");
namemap.AddPair(SCALAR_REP_MAX, "Maximum");
namemap.AddPair(SCALAR_REP_AVERAGE, "Average");
}
return namemap;
}
int MultiChannelDisplayMode::GetHashValue() const
{
if(RenderAsGrid)
return 0x1000000;
if(UseRGB)
return 0x8000000;
if(SelectedScalarRep != SCALAR_REP_COMPONENT)
return 0x4000000 + SelectedScalarRep;
return SelectedComponent;
}
bool MultiChannelDisplayMode::IsSingleComponent()
{
return !UseRGB && !RenderAsGrid && (SelectedScalarRep == SCALAR_REP_COMPONENT);
}
bool operator < (const MultiChannelDisplayMode &a, const MultiChannelDisplayMode &b)
{
return a.GetHashValue() < b.GetHashValue();
}
/* ===============================================================
MultiChannelDisplayMappingPolicy implementation
=============================================================== */
template <class TWrapperTraits>
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::MultiChannelDisplayMappingPolicy()
{
m_Animate = false;
}
template <class TWrapperTraits>
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::~MultiChannelDisplayMappingPolicy()
{
}
template <class TWrapperTraits>
void
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::Initialize(WrapperType *wrapper)
{
// Save the wrapper pointer
m_Wrapper = wrapper;
// Modified events from the display policy fire as modification events
// for the wrapper
Rebroadcaster::Rebroadcast(this, itk::ModifiedEvent(),
wrapper, WrapperMetadataChangeEvent());
Rebroadcaster::Rebroadcast(this, itk::ModifiedEvent(),
wrapper, WrapperDisplayMappingChangeEvent());
}
template <class TWrapperTraits>
void
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::UpdateImagePointer(ImageType *image)
{
// Component wrappers
typedef typename WrapperType::ComponentWrapperType ComponentWrapperType;
// Initialize the display slice selectors
for(unsigned int i=0; i<3; i++)
m_DisplaySliceSelector[i] = DisplaySliceSelector::New();
// If the number of components is 3, set up the RGB pipeline
if(m_Wrapper->GetNumberOfComponents() == 3)
{
m_LUTGenerator = GenerateLUTFilter::New();
m_LUTGenerator->SetInput(m_Wrapper->GetImage());
m_LUTGenerator->SetImageMinInput(m_Wrapper->GetImageMinObject());
m_LUTGenerator->SetImageMaxInput(m_Wrapper->GetImageMaxObject());
m_LUTGenerator->SetIntensityCurve(
m_Wrapper->GetComponentWrapper(0)->GetIntensityCurve());
// Initialize the filters that apply the LUT
for(unsigned int i=0; i<3; i++)
{
m_RGBMapper[i] = ApplyLUTFilter::New();
m_RGBMapper[i]->SetLookupTable(m_LUTGenerator->GetOutput());
for(unsigned int j=0; j<3; j++)
{
ComponentWrapperType *comp = m_Wrapper->GetComponentWrapper(j);
m_RGBMapper[i]->SetInput(j, comp->GetSlice(i));
}
// Add this filter as the input to the selector
m_DisplaySliceSelector[i]->AddSelectableInput(
MultiChannelDisplayMode(true, false, SCALAR_REP_COMPONENT),
m_RGBMapper[i]->GetOutput());
m_DisplaySliceSelector[i]->AddSelectableInput(
MultiChannelDisplayMode(false, true, SCALAR_REP_COMPONENT),
m_RGBMapper[i]->GetOutput());
}
}
else
{
m_LUTGenerator = NULL;
for(unsigned int j=0; j<3; j++)
m_RGBMapper[j] = NULL;
}
// Get the reference component wrapper whose properties will be shared
// with the other components
typedef typename WrapperType::ComponentWrapperType ComponentWrapper;
ComponentWrapper *first_comp = static_cast<ComponentWrapper *>(
m_Wrapper->GetComponentWrapper(0));
// The min/max for this LUT should be the global min/max, overriding
// the default, which is component-wise min/max.
first_comp->GetDisplayMapping()->SetReferenceIntensityRange(
m_Wrapper->GetImageMinObject(), m_Wrapper->GetImageMaxObject());
// Configure all the component wrappers display mappings
for(int j = 0; j < NUMBER_OF_SCALAR_REPS; j++)
{
ScalarRepresentation rep =
static_cast<ScalarRepresentation>(
SCALAR_REP_COMPONENT + j);
int nc = (j == 0) ? m_Wrapper->GetNumberOfComponents() : 1;
for(int k = 0; k < nc; k++)
{
// Get the component/derived wrapper
ScalarImageWrapperBase *sw = m_Wrapper->GetScalarRepresentation(rep, k);
// Try casting to the component type
ComponentWrapper *cw = dynamic_cast<ComponentWrapper *>(sw);
if(cw && cw != first_comp)
{
// Copy the LUT from the first comp to the current component.
cw->GetDisplayMapping()->CopyDisplayPipeline(first_comp->GetDisplayMapping());
}
else if(cw != first_comp)
{
AbstractContinuousImageDisplayMappingPolicy *dp =
static_cast<AbstractContinuousImageDisplayMappingPolicy *>(
sw->GetDisplayMapping());
// Copy the LUT from the first comp to the current component.
dp->SetColorMap(first_comp->GetColorMap());
}
// Pass inputs to the slice selector
for(int i = 0; i < 3; i++)
{
m_DisplaySliceSelector[i]->AddSelectableInput(
MultiChannelDisplayMode(false, false, rep, k),
sw->GetDisplaySlice(i));
}
}
}
// Set display mode to default
SetDisplayMode(MultiChannelDisplayMode());
}
template <class TWrapperTraits>
void
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::SetDisplayMode(MultiChannelDisplayMode mode)
{
// Store the mode
m_DisplayMode = mode;
// Select the proper output in the selection filters
for(int i = 0; i < 3; i++)
m_DisplaySliceSelector[i]->SetSelectedInput(mode);
// Point to the selected scalar representation
int nc = m_Wrapper->GetNumberOfComponents();
if(mode.UseRGB)
{
if(nc != 3)
throw IRISException("RGB mode requested for %d component image", nc);
m_ScalarRepresentation = NULL;
}
else if(mode.RenderAsGrid)
{
if(nc != 3)
throw IRISException("Grid rendering mode requested for %d component image", nc);
m_ScalarRepresentation = NULL;
}
else
{
if(mode.SelectedComponent >= nc || mode.SelectedComponent < 0)
throw IRISException("Requested component for display %d "
"is not in valid range [0, %d]",
mode.SelectedComponent, nc);
m_ScalarRepresentation =
m_Wrapper->GetScalarRepresentation(
mode.SelectedScalarRep, mode.SelectedComponent);
if(m_ScalarRepresentation == NULL)
std::cerr << "NULL!!!" << std::endl;
}
// Invoke the modified event
this->InvokeEvent(itk::ModifiedEvent());
}
template <class TWrapperTraits>
typename MultiChannelDisplayMappingPolicy<TWrapperTraits>::DisplaySlicePointer
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::GetDisplaySlice(unsigned int slice)
{
return m_DisplaySliceSelector[slice]->GetOutput();
}
template <class TWrapperTraits>
IntensityCurveInterface *
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::GetIntensityCurve() const
{
if(m_ScalarRepresentation)
{
return m_ScalarRepresentation->GetIntensityCurve();
}
else
{
return m_LUTGenerator->GetIntensityCurve();
}
}
template <class TWrapperTraits>
ColorMap *
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::GetColorMap() const
{
if(m_ScalarRepresentation)
{
return m_ScalarRepresentation->GetColorMap();
}
else return NULL;
}
template<class TWrapperTraits>
typename MultiChannelDisplayMappingPolicy<TWrapperTraits>::DisplayPixelType
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::MapPixel(const PixelType &val)
{
// This method should never be called directly for scalar modes (component, max, etc)
// because VectorImageWrapper should delegate calling this function to the
// appropriate scalar image wrapper.
assert(!m_ScalarRepresentation);
// Use the LUT
DisplayPixelType pix = m_RGBMapper[0]->MapPixel(val[0], val[1], val[2]);
return pix;
}
template <class TWrapperTraits>
void
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::SetColorMap(ColorMap *map)
{
// TODO: do we really need an implementation?
}
template <class TWrapperTraits>
bool
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::IsContrastMultiComponent() const
{
if(m_DisplayMode.UseRGB || m_DisplayMode.RenderAsGrid || m_Animate)
return true;
return false;
}
template<class TWrapperTraits>
Vector2d
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::GetNativeImageRangeForCurve()
{
double cmin, cmax;
// The native range is global componentwise max/min when we are in RGB mode
// or when we are in single component mode (because the curves are shared
// between these display modes).
if(m_DisplayMode.UseRGB || m_DisplayMode.RenderAsGrid ||
m_DisplayMode.SelectedScalarRep == SCALAR_REP_COMPONENT)
{
cmin = m_Wrapper->GetImageMinNative();
cmax = m_Wrapper->GetImageMaxNative();
}
// Otherwise, when displaying a derived component, the image range is specific
// to that component (the component has its own curve).
else
{
cmin = m_ScalarRepresentation->GetImageMinNative();
cmax = m_ScalarRepresentation->GetImageMaxNative();
}
return Vector2d(cmin, cmax);
}
template<class TWrapperTraits>
const ScalarImageHistogram *
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::GetHistogram(int nBins)
{
if(m_DisplayMode.UseRGB || m_DisplayMode.RenderAsGrid)
{
// In RGB mode, we should return a pooled histogram of the data.
return m_Wrapper->GetHistogram(nBins);
}
else
{
// Otherwise, we return the component-specific histogram
return m_ScalarRepresentation->GetHistogram(nBins);
}
}
template<class TWrapperTraits>
void
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::AutoFitContrast()
{
// It's safe to just call the parent's method
Superclass::AutoFitContrast();
}
template <class TWrapperTraits>
void
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::Save(Registry &folder)
{
// If the image has only one component, use the scalar representation
if(m_Wrapper->GetNumberOfComponents() == 1)
{
m_ScalarRepresentation->GetDisplayMapping()->Save(folder);
}
else
{
// We need to save the properties for each of the relevant scalar
// representations.
for(int i = 0; i < NUMBER_OF_SCALAR_REPS; i++)
{
ScalarRepresentation rep = static_cast<ScalarRepresentation>(i);
std::string repname = MultiChannelDisplayMode::GetScalarRepNames()[rep];
// Get the scalar representation in question
ScalarImageWrapperBase *scalar = m_Wrapper->GetScalarRepresentation(rep);
// Save its properties
scalar->GetDisplayMapping()->Save(folder.Folder(repname));
}
// We also need to state what the current representation is and whether
// we are using RGB mode
m_DisplayMode.Save(folder);
}
}
template <class TWrapperTraits>
void
MultiChannelDisplayMappingPolicy<TWrapperTraits>
::Restore(Registry &folder)
{
// If the image has only one component, use the scalar representation
if(m_Wrapper->GetNumberOfComponents() == 1)
{
m_ScalarRepresentation->GetDisplayMapping()->Restore(folder);
}
else
{
// We need to restore the properties for each of the relevant scalar
// representations.
for(int i = 0; i < NUMBER_OF_SCALAR_REPS; i++)
{
ScalarRepresentation rep = static_cast<ScalarRepresentation>(i);
std::string repname = MultiChannelDisplayMode::GetScalarRepNames()[rep];
// Get the scalar representation in question
ScalarImageWrapperBase *scalar = m_Wrapper->GetScalarRepresentation(rep);
// Save its properties
scalar->GetDisplayMapping()->Restore(folder.Folder(repname));
}
// Restore the display mode
MultiChannelDisplayMode mode = MultiChannelDisplayMode::Load(folder);
// Make sure the display mode is compatible
if(m_Wrapper && mode.UseRGB && m_Wrapper->GetNumberOfComponents() != 3)
mode = MultiChannelDisplayMode();
if(m_Wrapper && mode.RenderAsGrid && m_Wrapper->GetNumberOfComponents() != 3)
mode = MultiChannelDisplayMode();
if(m_Wrapper && mode.SelectedComponent >= m_Wrapper->GetNumberOfComponents())
mode = MultiChannelDisplayMode();
this->SetDisplayMode(mode);
}
}
template class ColorLabelTableDisplayMappingPolicy<LabelImageWrapperTraits>;
template class LinearColorMapDisplayMappingPolicy<LevelSetImageWrapperTraits>;
template class LinearColorMapDisplayMappingPolicy<SpeedImageWrapperTraits>;
template class MultiChannelDisplayMappingPolicy<AnatomicImageWrapperTraits<GreyType> >;
template class CachingCurveAndColorMapDisplayMappingPolicy<
ComponentImageWrapperTraits<GreyType> >;
template class CachingCurveAndColorMapDisplayMappingPolicy<
AnatomicScalarImageWrapperTraits<GreyType> >;
template class CachingCurveAndColorMapDisplayMappingPolicy<
VectorDerivedQuantityImageWrapperTraits<GreyVectorToScalarMagnitudeFunctor> >;
template class CachingCurveAndColorMapDisplayMappingPolicy<
VectorDerivedQuantityImageWrapperTraits<GreyVectorToScalarMaxFunctor> >;
template class CachingCurveAndColorMapDisplayMappingPolicy<
VectorDerivedQuantityImageWrapperTraits<GreyVectorToScalarMeanFunctor> >;
|