File: SnakeParametersPreviewPipeline.h

package info (click to toggle)
itksnap 3.6.0-5
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 22,132 kB
  • sloc: cpp: 91,089; ansic: 1,994; sh: 327; makefile: 16
file content (229 lines) | stat: -rw-r--r-- 7,352 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
/*=========================================================================

  Program:   ITK-SNAP
  Module:    $RCSfile: SnakeParametersPreviewPipeline.h,v $
  Language:  C++
  Date:      $Date: 2009/01/23 20:09:38 $
  Version:   $Revision: 1.4 $
  Copyright (c) 2007 Paul A. Yushkevich
  
  This file is part of ITK-SNAP 

  ITK-SNAP is free software: you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation, either version 3 of the License, or
  (at your option) any later version.

  This program is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.
 
  You should have received a copy of the GNU General Public License
  along with this program.  If not, see <http://www.gnu.org/licenses/>.

  -----

  Copyright (c) 2003 Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

  This software is distributed WITHOUT ANY WARRANTY; without even
  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  PURPOSE.  See the above copyright notices for more information. 

=========================================================================*/
#ifndef __SnakeParametersPreviewPipeline_h_
#define __SnakeParametersPreviewPipeline_h_

#include "itkImage.h"
#include "itkRGBAPixel.h"
#include "itkCovariantVector.h"
#include "itkUnaryFunctorImageFilter.h"
#include "SnakeParameters.h"
#include "ColorMap.h"
#include "ImageWrapperTraits.h"

template <class TSpeedImageType, class TImageType> class SNAPLevelSetFunction;
template<class TFilter> class LevelSetExtensionFilter;

class vtkImageImport;
class vtkContourFilter;
class LevelSetPreviewPipeline2D;
class GlobalState;

namespace itk {
  template<class TInputImage, class TOutputImage> 
    class ParallelSparseFieldLevelSetImageFilter;
};

class LevelSetPreview2d;

// #define SNAKE_PREVIEW_ADVANCED 1

/** 
 * \class SnakeParametersPreviewPipeline
 * \brief A pipeline used to preview snake parameters.
 * 
 * Given a set of control points an image, and some snake parameters, this
 * class computes a b-spline curve based on those control points, creates a
 * level set embedding of the curve, and computes various level set evolution
 * forces acting on the curve.
 */
class SnakeParametersPreviewPipeline
{
public:
  SnakeParametersPreviewPipeline(GlobalState *state);
  virtual ~SnakeParametersPreviewPipeline();

  // Images used by this class (internally and externally)
  typedef itk::Image<unsigned char, 2> CharImageType;
  typedef itk::Image<float, 2> FloatImageType;
  typedef itk::Image<short, 2> ShortImageType;

  // Define a color image for display
  typedef itk::RGBAPixel<unsigned char> DisplayPixelType;
  typedef itk::Image<DisplayPixelType,2> DisplayImageType;

  // Index type used to refer to pixels
  typedef FloatImageType::IndexType IndexType;

  // Force types
  enum ForceType {CURVATURE=0, ADVECTION, PROPAGATION, TOTAL };
  
  // A sample from the curve
  struct SampledPoint {
    // The geometry of the point
    double t;
    Vector2d x;
    Vector2d n;
    double kappa;
    
    // The forces acting on the point
    double PropagationForce;
    double CurvatureForce;
    double AdvectionForce;
    
    double operator[](unsigned int i) const
      { return x[i]; } 
  };

  // Various list types
  typedef std::vector<Vector2d> ControlPointList;
  typedef std::vector<Vector2d> LevelSetContourType;
  typedef std::vector<SampledPoint> SampledPointList;  

  /** Set the speed image */
  void SetSpeedImage(ShortImageType *image);

  /** Set the snake parameters */
  void SetSnakeParameters(const SnakeParameters &parameters);

  /** Set the control points of the interface curve */
  void SetControlPoints(const ControlPointList &points);

  /** Change just one control point, with an option of changing it
   * quickly, ie, not recomputing the level set, only the curve */
  void ChangeControlPoint(unsigned int index, const Vector2d &point,
    bool quickUpdate);

  /** Set the number of points sampled for display of the curve */
  void SetNumberOfSampledPoints(unsigned int number);
  
  /** Update the internals of the pipeline and compute the curve and the
   * force points.  This method requires a GL context because it relies on
   * GL tesselation code for generating an image from the curve */
  void Update();

  /** Get the speed image */
  irisGetMacro(SpeedImage, ShortImageType *);
  
  /** Get a reference to the control points of the interface curve */
  irisGetMacro(ControlPoints,const ControlPointList &);

  /** Get a list of densely interpolated points on the curve (for drawing) */
  irisGetMacro(SampledPoints,const SampledPointList &);

  /** Get the demo loop contour */
  std::vector<Vector2d> &GetDemoLoopContour();

  /** Get the color image corresponding to the speed image */
  DisplayImageType *GetDisplayImage()  
    { return m_DisplayMapper->GetOutput(); }

  /** Set the idle callback function that FLTK should call in demo mode */
  void AnimationCallback();

  /** Have the animation restart on the next callback */
  void AnimationRestart();

private:

  /** The global state */
  GlobalState *m_GlobalState;
      
  /** The speed image */
  itk::SmartPointer<ShortImageType> m_SpeedImage;

  // Gradient image used by this component
  typedef itk::CovariantVector<float,2> VectorType;
  typedef itk::Image<VectorType,2> VectorImageType;
  typedef itk::SmartPointer<VectorImageType> VectorImagePointer;
  
  /** The grandient of the speed image */
  VectorImagePointer m_GradientImage;
  
  /** A set of snake parameters */
  SnakeParameters m_Parameters;
    
  /** A list of control points */
  ControlPointList m_ControlPoints;
  
  /** Number of points to sample from the curve */
  unsigned int m_NumberOfSampledPoints;

  /** A list of sampled points */
  SampledPointList m_SampledPoints;

  // Flags indicating which part of the pipeline should be refreshed
  bool m_ControlsModified;
  bool m_SpeedModified;
  bool m_ParametersModified;
  bool m_QuickUpdate;
    
  // Internal components of the Update method
  void UpdateLevelSetFunction();
  void UpdateContour();
  void UpdateLevelSet();
  void UpdateForces();

  // A filter used to convert the speed image to a color image to display on the screen
  class SimpleColorMapFunctor
  {
  public:
    ColorMap::RGBAType operator()(short in)
      {
      float t = (in - m_SpeedMin) / (m_SpeedMax - m_SpeedMin);
      return m_ColorMap->MapIndexToRGBA(t);
      }
    SimpleColorMapFunctor()
    {
      m_ColorMap = ColorMap::New();
      m_ColorMap->SetToSystemPreset(ColorMap::COLORMAP_SPEED);
      SpeedImageWrapperTraits::GetFixedIntensityRange(m_SpeedMin, m_SpeedMax);
    }
  private:
    SmartPtr<ColorMap> m_ColorMap;
    float m_SpeedMin, m_SpeedMax;
  };

  typedef itk::UnaryFunctorImageFilter<
    ShortImageType,DisplayImageType,SimpleColorMapFunctor> IntensityFilterType;
  typedef itk::SmartPointer<IntensityFilterType> IntensityFilterPointer;
  IntensityFilterPointer m_DisplayMapper;

  // Demo loop object
  LevelSetPreview2d *m_DemoLoop;
};


#endif // __SnakeParametersPreviewPipeline_h_