1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
|
#!/usr/bin/make -f
#export DH_VERBOSE := 1
export PYBUILD_NAME=iva
mandir := $(CURDIR)/debian/man
debfolder := $(CURDIR)/debian
read_trim_dir := $(CURDIR)/iva/read_trim
gage_dir := $(CURDIR)/iva/gage
ratt_dir := $(CURDIR)/iva/ratt
%:
dh $@ --buildsystem=pybuild
override_dh_auto_build:
chmod a-x $(read_trim_dir)/adapters.fasta
chmod a+x $(gage_dir)/getCorrectnessStats.sh
chmod a+x $(ratt_dir)/main.ratt.pl
chmod a+x scripts/*
javac -verbose $(gage_dir)/*.java
dh_auto_build --
override_dh_installman:
mkdir -p $(mandir)
PYTHONPATH=. help2man -N -o $(mandir)/iva.1 \
-n 'iterative virus assembler' \
--no-discard-stderr ./scripts/iva
PYTHONPATH=. help2man -N -o $(mandir)/iva_qc.1 \
-n 'compare an assembly to a reference' \
--no-discard-stderr ./scripts/iva_qc
PYTHONPATH=. help2man -N -o $(mandir)/iva_qc_make_db.1 \
-n 'make a database as input for iva_qc' \
--no-discard-stderr ./scripts/iva_qc_make_db
dh_installman --
override_dh_auto_clean:
rm -rf .pybuild *.egg-info .pytest_cache build
rm -f iva/gage/*.class
rm -rf $(mandir)
find . -name __pycache__ | xargs rm -rf
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
python3 -m pytest --verbose
endif
|
