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Source: iva
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Jorge Soares <j.s.soares@gmail.com>,
Sascha Steinbiss <satta@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9),
libssl-dev,
bioperl,
fastaq (>= 1.6),
kmc,
help2man,
mummer,
python3,
python3-setuptools,
python3-numpy,
python3-nose,
python3-networkx,
python3-pysam,
samtools,
smalt,
default-jdk-headless
Standards-Version: 3.9.8
X-Python3-Version: >= 3.3
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/iva.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/iva.git
Homepage: https://github.com/sanger-pathogens/iva
Package: iva
Architecture: any
Depends: ${misc:Depends},
${python3:Depends},
fastaq (>= 1.6),
kmc,
mummer,
smalt,
samtools,
python3-numpy,
python3-networkx,
python3-pysam,
default-jre-headless
Recommends: r-base-core,
bioperl,
trimmomatic
Description: iterative virus sequence assembler
IVA is a de novo assembler designed to assemble
virus genomes that have no repeat sequences,
using Illumina read pairs sequenced from mixed
populations at extremely high depth.
.
IVA's main algorithm works by iteratively extending
contigs using aligned read pairs. Its input can be
just read pairs, or additionally you can provide an
existing set of contigs to be extended. Alternatively,
it can take reads together with a reference sequence.
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