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\begin{DoxyItemize}
\item \mbox{\hyperlink{installpage}{Installation}}
\item \mbox{\hyperlink{manualpage}{Manual}}
\item \mbox{\hyperlink{cookbookpage}{Cookbook}}
\end{DoxyItemize}\hypertarget{index_autotoc_md23}{}\section{Publication}\label{index_autotoc_md23}
\href{https://doi.org/10.1186/s13059-018-1618-7}{\tt An amplicon-\/based sequencing framework for accurately measuring intrahost virus diversity using Primal\+Seq and i\+Var}
{\itshape Genome Biology} 2019 {\bfseries 20}\+:8
Nathan D Grubaugh, Karthik Gangavarapu, Joshua Quick, Nathaniel L Matteson, Jaqueline Goes De Jesus, Bradley J Main, Amanda L Tan, Lauren M Paul, Doug E Brackney, Saran Grewal, Nikos Gurfield, Koen KA Van Rompay, Sharon Isern, Scott F Michael, Lark L Coffey, Nicholas J Loman, Kristian G Andersen
bio\+Rxiv doi\+: \href{https://doi.org/10.1101/383513}{\tt https\+://doi.\+org/10.\+1101/383513}
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