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#include<iostream>
#include "../src/call_consensus_pileup.h"
#include "../src/allele_functions.h"
int main() {
int num_tests = 8;
allele a1 = {
"A",
40,
0,
30,
0,
0,
0
};
allele a2 = {
"T",
40,
10,
30,
0,
0,
0
};
allele a3 = {
"G",
40,
10,
10,
0,
0,
0
};
allele a4 = {
"+T",
30,
10,
10,
0,
0,
0
};
allele a5 = {
"+AG",
30,
10,
10,
0,
0,
0
};
allele a6 = {
"+AC",
30,
4,
10,
0,
0,
0
};
allele a7 = {
"+WT",
30,
2,
10,
0,
0,
0
};
int success = 0;
allele arr[] = {a1,a2,a3,a4,a5};
ret_t s;
std::vector<allele> ad(arr, arr+sizeof(arr)/sizeof(allele));
int size = sizeof(arr)/sizeof(allele);
for(int i = 0;i<size;i++){
ad.at(i) = arr[i];
}
s = get_consensus_allele(ad, 0, 0, 'N');
success += (s.nuc.compare("DW") == 0) ? 1: 0;
success += (s.q.compare("8+") == 0) ? 1 : 0;
ad.push_back(a6);
s = get_consensus_allele(ad, 0, 0, 'N');
success += (s.nuc.compare("DAS") == 0) ? 1: 0;
success += (s.q.compare("8++") == 0) ? 1 : 0;
ad.push_back(a7);
s = get_consensus_allele(ad, 0, 0, 'N');
success += (s.nuc.compare("DAB") == 0) ? 1: 0;
success += (s.q.compare("8++") == 0) ? 1 : 0;
allele a8 = {
"-AT",
10,
5,
20,
0,
0,
0
};
allele a9 = {
"-A",
10,
5,
20,
0,
0,
0
};
allele a10 = {
"-AG",
10,
5,
20,
0,
0,
0
};
allele a11 = {
"-AGT",
10,
5,
20,
0,
0,
0
};
allele del_arr[] = {a8, a9, a10, a11};
ret_t del_s;
std::vector<allele> del_ad(del_arr, del_arr+sizeof(del_arr)/sizeof(allele));
s = get_consensus_allele(del_ad, 0, 0, 'N');
success += (s.nuc.compare("") == 0) ? 1: 0;
success += (s.q.compare("") == 0) ? 1 : 0;
return (success == num_tests) ? 0 : -1;
}
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