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Description: fix privacy-breach-generic in cookbookpage.html
The document refers to a diagram hosted on github, but there is a local copy
readily available for use, so lets use this one.
.
The file layout is somewhat odd, so I refrained to forward upstream.
Author: Étienne Mollier <emollier@debian.org>
Forwarded: not-needed
Last-Update: 2021-09-16
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
@@ -85,7 +85,7 @@
<div class="line">out_dir = "<output directory>"</div>
<div class="line">bed = "<bed-file-with-primer-positions>"</div>
<div class="line">ref="<path to reference fasta>"</div>
-</div><!-- fragment --><p><img src="https://raw.githubusercontent.com/andersen-lab/ivar/master/pipeline/pipeline.png" alt="" width="500" class="inline"/></p>
+</div><!-- fragment --><p><img src="./pipeline/pipeline.png" alt="" width="500" class="inline"/></p>
<h2>Call iSNVs from samples with known reference sequence</h2>
<p><a href="https://github.com/andersen-lab/paper_2018_primalseq-ivar/blob/master/cookbook/CookBook.ipynb">Link to Jupyter Notebook</a></p>
<p><a href="https://github.com/andersen-lab/ivar/tree/master/pipeline">Link to pipeline</a></p>
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