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\chapter{Documentation}
\hypertarget{index}{}\label{index}\index{Documentation@{Documentation}}
\label{index_mainpage}%
\Hypertarget{index_mainpage}%
\begin{DoxyItemize}
\item \doxysectlink{installpage}{Installation}{0}
\item \doxysectlink{manualpage}{Manual}{0}
\item \doxysectlink{cookbookpage}{Cookbook}{0}
\end{DoxyItemize}\hypertarget{index_autotoc_md23}{}\doxysection{\texorpdfstring{Publication}{Publication}}\label{index_autotoc_md23}
\href{https://doi.org/10.1186/s13059-018-1618-7}{\texttt{ An amplicon-\/based sequencing framework for accurately measuring intrahost virus diversity using Primal\+Seq and i\+Var}}
{\itshape Genome Biology} 2019 {\bfseries{20}}\+:8
Nathan D Grubaugh, Karthik Gangavarapu, Joshua Quick, Nathaniel L Matteson, Jaqueline Goes De Jesus, Bradley J Main, Amanda L Tan, Lauren M Paul, Doug E Brackney, Saran Grewal, Nikos Gurfield, Koen KA Van Rompay, Sharon Isern, Scott F Michael, Lark L Coffey, Nicholas J Loman, Kristian G Andersen
bio\+Rxiv doi\+: \href{https://doi.org/10.1101/383513}{\texttt{ https\+://doi.\+org/10.\+1101/383513}}
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