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<project name="jaligner" default="build" basedir=".">
<property file="build.properties" />
<target name="clean" description="Delete the build directory">
<delete dir="${build.dir}" />
</target>
<target name="init" depends="clean">
<echo>JAVA_HOME: ${java.home}</echo>
<tstamp />
<mkdir dir="${build.dir}" />
</target>
<target name="compile" depends="init" description="Compile source code">
<javac srcdir="${src.dir}" destdir="${build.dir}" debug="${debug}" optimize="${optimize}" deprecation="${deprecation}" classpath="${class.path}" includeantruntime="false">
<include name="**/*.java" />
</javac>
</target>
<target name="resources" depends="init" description="Copy non-source code under the build directory">
<copy todir="${build.dir}/jaligner/example/sequences">
<fileset dir="src/jaligner/example/sequences">
</fileset>
</copy>
<copy todir="${build.dir}/jaligner/matrix/matrices">
<fileset dir="src/jaligner/matrix/matrices">
</fileset>
</copy>
<copy todir="${build.dir}/jaligner/ui/images/gifs">
<fileset dir="src/jaligner/ui/images/gifs">
</fileset>
</copy>
</target>
<target name="jar" depends="compile,resources">
<jar jarfile="${project.name}.jar" basedir="${build.dir}">
<manifest>
<attribute name="Main-Class" value="jaligner.ui.AlignCommandLine" />
<attribute name="Created-At" value="${DSTAMP}${TSTAMP}" />
</manifest>
</jar>
</target>
<target name="build" depends="jar,clean" description="Build jar file" />
<target name="export" depends="" description="Export source code from CVS repository">
<delete dir="${src.dir}" />
<cvs cvsRoot="${cvs.root}" command="${export.command}" />
</target>
<target name="run" depends="jar">
<java jar="jaligner.jar" classpath="${class.path}" fork="true" />
</target>
<target name="javadoc" depends="init" description="Generate API Javadocs">
<mkdir dir="${javadoc.dir}" />
<javadoc packagenames="${packagename}.*" sourcepath="src" destdir="${javadoc.dir}" author="${javadoc.author}" version="${javadoc.version}" use="${javadoc.use}" private="${javadoc.private}" windowtitle="${javadoc.window.title}" doctitle="${javadoc.doc.title}" header="${javadoc.header}" footer="${javadoc.footer}" bottom="${javadoc.bottom}" stylesheetfile="${javadoc.style}" classpath="${class.path}">
</javadoc>
</target>
</project>
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