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<head>
<title>Removing Redundancy</title>
</head>
<body>
<p>
<strong>Removing redundancy</strong>
</p>
<p>
Selecting the option in the Alignment window's <strong>Edit</strong>
menu or pressing <strong>'CONTROL+D'</strong> brings up a dialog box
asking you to select a threshold. If the percentage identity between
the aligned positions of any two sequences in the visible alignment
exceeds this value, the shorter sequence is discarded.<br> <em>Note:</em>
The redundancy calculation is done when the dialog box is opened.
For large numbers of sequences this can take a long time as all
pairs have to be compared.
</p>
</body>
</html>
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