1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
|
# (exonerate delimits GFF with [START|END] OF GFF DUMP)
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2015-01-16
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
contig_1146 exonerate:protein2genome:local gene 8534 11269 3652 - . gene_id 0 ; sequence DDB_G0269124 ; gene_orientation .
contig_1146 exonerate:protein2genome:local cds 8534 11269 . - .
contig_1146 exonerate:protein2genome:local exon 8534 11269 . - . insertions 3 ; deletions 6
#TODO need to understand why GFF features is from 11269 but Align is from 11270
contig_1146 exonerate:protein2genome:local similarity 8534 11269 3652 - . alignment_id 0 ; Query DDB_G0269124 ; Align 11270 143 120 ; Align 11150 187 282 ; Align 10865 281 888 ; Align 9977 578 1068 ; Align 8909 935 375
# and a made-up alignment to a sequence in exonerateseqs.fa
contig_1146 exonerate:protein2genome:local similarity 8534 11269 3652 - . alignment_id 0 ; Query DDB_G0280897 ; Align 11270 143 120
# --- END OF GFF DUMP ---
|
