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|
"run Clazz.startProfiling() first
Total new objects: 3208398
count exec(ms)
-------- -------- ------------------------------
...2100232 ....-40921 undefined[]
....504006 .....12402 java.lang.StringBuilder
....436605 ......3414 java.util.HashMap.Node
....411205 ......2841 jalview.datamodel.Annotation
....232907 ......1122 Float
....215619 ......2440 jalview.datamodel.features.FeatureStore$SearchCriterion$3
....206107 ......1241 java.awt.Color
....206007 ......1059 Integer
....205602 ......3110 jalview.datamodel.ResidueCount
....205602 ......1697 jalview.datamodel.Profile
....172921 ......3075 java.util.ArrayList.Itr
....170314 .....-3144 Object[]
....139806 .......457 Long
....138605 ......1033 swingjs.json.JSON.JSONList
....108563 ......1065 java.util.HashMap
....108553 .....-2025 java.util.HashMap.Node[]
....107812 ......9397 jalview.datamodel.SequenceFeature
.....79143 ......1124 java.util.ArrayList
.....61212 ......1423 java.util.HashMap.EntryIterator
.....52231 ......1485 java.util.HashMap.EntrySet
.....47591 .......876 swingjs.json.JSON.JSONMap
.....46224 .......266 swingjs.json.JSON.JSONList.ListIterator
......7084 .......450 jalview.datamodel.features.NCNode
......3870 ........33 jalview.analysis.AlignmentUtils.DnaVariant
......3076 ........96 java.awt.Dimension
......2153 ........43 java.beans.PropertyChangeEvent
......1561 ........13 jalview.datamodel.SequenceCursor
......1356 ........18 java.util.LinkedHashMap.Entry
......1329 .......105 jalview.datamodel.features.NCList
......1290 .......-22 java.util.ArrayList[]
.......687 .........9 java.util.Hashtable.Entry
.......684 ........16 jalview.datamodel.DBRefEntry
.......526 ........16 javajs.util.Lst
.......505 ........21 java.util.TreeMap.ValueIterator
.......479 .........9 javax.swing.event.EventListenerList
.......449 ........19 java.util.HashSet
.......449 .........9 java.util.ArrayList$SubList$1
.......449 .........8 java.util.ArrayList.SubList
.......440 .........0 jalview.datamodel.HiddenCursorPosition
.......402 ........-8 java.lang.Class[]
.......346 .........4 java.awt.geom.AffineTransform
.......346 .........4 java.awt.BasicStroke
.......325 ........28 java.awt.EventDispatchThread$1
.......290 ........-7 java.beans.PropertyChangeListener[]
.......287 ........11 java.util.Hashtable.Enumerator
.......280 .........5 java.awt.Rectangle
.......276 .........7 java.util.TreeMap.EntryIterator
.......274 ........-7 java.awt.Component[]
.......261 ........10 java.beans.PropertyChangeSupport
.......261 .........6 java.beans.PropertyChangeSupport.PropertyChangeListenerMap
.......226 .........3 java.util.Collections.UnmodifiableSet
.......219 .........1 com.stevesoft.pat.StrPos
.......206 .........5 java.awt.AWTEventMulticaster
.......200 .........5 java.util.HashMap.KeySet
.......200 .........5 java.util.HashMap.KeyIterator
.......199 ........35 java.awt.EventDispatchThread
.......199 ........17 java.awt.EventDispatchThread.HierarchyEventFilter
.......198 .........2 javax.swing.plaf.ComponentInputMapUIResource
.......187 .........3 java.util.Arrays.ArrayList
.......182 ........14 java.awt.event.ContainerEvent
.......176 ........-7 java.util.Hashtable.Entry[]
.......173 .........2 javax.swing.ActionMap
.......173 ........-5 javax.swing.KeyStroke[]
.......171 .........3 java.awt.Insets
.......169 .........6 javax.swing.AbstractButton.Handler
.......169 .........5 javax.swing.JMenuItem.MenuItemFocusListener
.......169 .........2 swingjs.plaf.ButtonListener
.......154 .........4 javax.swing.KeyboardManager.ComponentKeyStrokePair
.......145 ........14 java.awt.event.MouseEvent
.......138 .........1 jalview.datamodel.PDBEntry
.......136 .........5 java.util.Vector.Itr
.......132 .........2 javajs.util.SB
.......126 .........3 java.awt.EventQueueItem
.......122 .........6 java.io.ByteArrayInputStream
.......122 .........6 java.io.BufferedInputStream
.......116 .........1 javax.swing.DefaultButtonModel
.......112 .........6 java.lang.StringBuffer
.......100 .........6 jalview.datamodel.features.FeatureStore$SearchCriterion$2
........99 .........2 javax.swing.event.ChangeEvent
........94 .......690 javax.swing.JMenuItem
........88 .........3 java.util.Hashtable
........88 .........0 java.util.TreeMap.Entry
........77 .........1 javax.swing.ArrayTable
........72 .........8 jalview.datamodel.features.FeatureStore
........72 .........1 java.util.TreeMap
........69 ........-1 java.util.concurrent.ConcurrentHashMap.HashEntry[]
........67 .......176 jalview.datamodel.Sequence
........67 ........15 jalview.datamodel.features.SequenceFeatures
........67 .........7 java.net.URL
........65 .........1 javajs.util.AjaxURLConnection
........64 .........1 java.util.concurrent.ConcurrentHashMap.Segment
........63 ........-2 jalview.datamodel.SequenceGroup[]
........60 .........4 java.util.Collections$UnmodifiableCollection$1
........60 .........0 javax.swing.SizeRequirements
........55 .......163 swingjs.json.JSON.JSONReader
........53 .........5 java.util.ArrayList.ListItr
........53 .........4 javax.swing.JToggleButton.ToggleButtonModel
........53 ........-2 swingjs.api.js.DOMNode[]
........51 ........-2 jalview.datamodel.SequenceI[]
........44 .........2 jalview.util.LinkedIdentityHashSet.IdentityWrapper
........39 .........5 jalview.datamodel.HiddenColumnsCursor
........38 .........1 java.lang.StackTraceElement
........35 .......169 javax.swing.JCheckBoxMenuItem
........34 ........11 jalview.util.MapList
........33 .........5 java.util.StringTokenizer
........33 .........5 jalview.datamodel.Sequence.DBModList
........33 .........2 jalview.renderer.ScaleRenderer.ScaleMark
........33 .........2 jalview.ext.ensembl.EnsemblXref
........32 .........1 java.util.Collections.SynchronizedRandomAccessList
........31 .........3 java.awt.event.ComponentEvent
........31 .........2 com.stevesoft.pat.oneChar
........31 .........1 java.lang.reflect.Constructor
........31 .........0 java.awt.Point
........30 .........0 javax.swing.KeyStroke
........30 .........0 javax.swing.ComponentInputMap
........28 .........1 com.stevesoft.pat.patInt
........27 .........1 java.util.Vector
........24 .........1 javax.swing.DefaultSingleSelectionModel
........23 .........5 java.util.SubList$1
........23 .........3 java.util.AbstractList.ListItr
........23 .........3 jalview.datamodel.Mapping
........23 .........2 java.util.TreeMap.EntrySet
........23 .........1 java.util.TreeMap.Values
........22 ........21 javax.swing.JPopupMenu
........22 ........14 javax.swing.JPopupMenu.Separator
........22 .........2 javax.swing.JMenu.WinListener
........22 .........2 javax.swing.JMenu.MenuChangeListener
........22 .........2 java.util.TimSort
........22 .........1 java.util.RandomAccessSubList
........22 .........0 swingjs.plaf.JSPopupMenuUI.JSMenuKeyListener
........21 ........41 javax.swing.JMenu
........21 .........2 jalview.ext.ensembl.EnsemblProtein
........21 .........0 jalview.ext.ensembl.EnsemblCdna
........20 .........0 java.awt.FlowLayout
........18 .......143 javax.swing.JRadioButtonMenuItem
........18 .........3 java.util.Formatter.Flags
........18 .........1 java.awt.event.InvocationEvent
........18 .........0 java.awt.event.ItemEvent
........18 .........0 java.awt.BorderLayout
........16 .........0 jalview.datamodel.features.FeatureAttributes.AttributeData
........15 ........11 javax.swing.JPanel
........15 .........1 javax.swing.JComponent$2
........14 .......406 jalview.datamodel.Alignment
........14 .........7 jalview.datamodel.HiddenColumns
........14 .........1 jalview.gui.ColourMenuHelper$3
........14 .........0 java.util.LinkedList.ListItr
........14 .........0 jalview.schemes.JalviewColourScheme
........14 .........0 jalview.datamodel.HiddenSequences
........13 .........2 jalview.util.ReverseListIterator
........13 .........1 java.util.LinkedHashMap
........12 .........1 java.awt.AlphaComposite
........11 .........0 jalview.jbgui.GAlignFrame$1
........10 .........0 java.util.BitSet
........10 .........0 java.awt.geom.Rectangle2D.Float
........10 .........0 java.awt.Color[]
.........9 .........1 java.util.LinkedHashMap.LinkedEntrySet
.........9 .........1 java.util.LinkedHashMap.LinkedEntryIterator
.........8 .........5 java.util.Formatter.FormatSpecifier
.........8 .........0 java.util.Formatter.FixedString
.........8 .........0 java.awt.Font
.........8 .........0 com.stevesoft.pat.Pthings
.........7 .........2 com.stevesoft.pat.Bracket
.........7 .........1 java.util.concurrent.ConcurrentHashMap.HashEntry
.........7 .........0 javax.swing.text.Segment
.........6 .........1 java.util.AbstractList.Itr
.........6 .........1 com.stevesoft.pat.SubMark
.........6 .........1 com.stevesoft.pat.OrMark
.........6 .........1 com.stevesoft.pat.FastMulti
.........6 .........0 swingjs.JSFontMetrics
.........6 .........0 javax.swing.SizeRequirements[]
.........6 .........0 javax.swing.DefaultBoundedRangeModel
.........6 .........0 java.util.Formatter.FormatString[]
.........6 .........0 jalview.datamodel.Range
.........6 .........0 com.stevesoft.pat.Range
.........5 .........1 swingjs.JSGraphics2D
.........5 .........0 sun.java2d.StateTrackableDelegate
.........5 .........0 javax.swing.event.InternalFrameEvent
.........5 .........0 java.awt.RenderingHints
.........5 .........0 jalview.renderer.ResidueShader
.........5 .........0 Boolean
.........4 .........3 javax.swing.JLabel
.........4 .........3 jalview.analysis.AnnotationSorter
.........4 .........2 java.util.concurrent.ConcurrentHashMap
.........4 .........1 jalview.analysis.AnnotationSorter$2
.........4 .........0 sun.java2d.StateTrackable.State
.........4 .........0 javax.swing.JScrollBar.ModelListener
.........4 .........0 java.util.concurrent.ConcurrentHashMap.Segment[]
.........4 .........0 java.awt.geom.RectIterator
.........4 .........0 java.awt.event.AdjustmentEvent
.........4 .........0 jalview.ext.ensembl.EnsemblSeqProxy.EnsemblSeqType
.........4 .........0 jalview.analysis.AnnotationSorter$3
.........4 .........0 jalview.analysis.AnnotationSorter$1
.........4 .........0 com.stevesoft.pat.End
.........4 ........-1 jalview.datamodel.Annotation[]
.........3 ........46 java.awt.image.BufferedImage
.........3 .........4 java.awt.image.DataBufferInt
.........3 .........3 java.awt.image.DirectColorModel
.........3 .........1 java.awt.GridLayout
.........3 .........1 jalview.datamodel.StartRegionIterator
.........3 .........0 swingjs.JSToolkit$1
.........3 .........0 sun.font.FontDesignMetrics.KeyReference
.........3 .........0 sun.font.FontDesignMetrics
.........3 .........0 javax.swing.ButtonGroup
.........3 .........0 java.util.regex.Matcher
.........3 .........0 java.util.Collections.SynchronizedSet
.........3 .........0 java.awt.image.SinglePixelPackedSampleModel
.........3 .........0 jalview.schemes.NucleotideColourScheme
.........3 .........0 jalview.renderer.ScaleRenderer
.........3 .........0 jalview.gui.AnnotationPanel.DragMode
.........3 .........0 jalview.datamodel.features.FeatureAttributes.Datatype
.........3 .........0 jalview.datamodel.VisibleContigsIterator
.........3 .........0 jalview.analysis.AnnotationSorter.SequenceAnnotationOrder
.........2 .......190 javax.swing.JScrollBar
.........2 ........16 javax.swing.JScrollPane.ScrollBar
.........2 ........13 com.stevesoft.pat.Regex
.........2 ........10 javax.swing.JProgressBar
.........2 .........2 java.awt.Container
.........2 .........1 java.util.Hashtable.KeySet
.........2 .........1 java.lang.IndexOutOfBoundsException
.........2 .........1 java.awt.geom.Path2D.Float.CopyIterator
.........2 .........1 java.awt.geom.Path2D.Float
.........2 .........0 javax.swing.text.AbstractDocument.DefaultDocumentEvent
.........2 .........0 javax.swing.event.UndoableEditEvent
.........2 .........0 javax.swing.border.LineBorder
.........2 .........0 javax.swing.JProgressBar.ModelListener
.........2 .........0 java.util.LinkedHashMap.LinkedValues
.........2 .........0 java.util.LinkedHashMap.LinkedValueIterator
.........2 .........0 java.util.IdentityHashMap.KeyIterator
.........2 .........0 java.util.Collections.SynchronizedCollection
.........2 .........0 java.util.Collections.SingletonList
.........2 .........0 java.util.Collections$1
.........2 .........0 java.util.ArrayDeque
.........2 .........0 java.lang.Thread
.........2 .........0 java.lang.StackTraceElement[]
.........2 .........0 java.awt.event.ActionEvent
.........2 .........0 jalview.util.IntRangeComparator
.........2 .........0 jalview.io.SequenceAnnotationReport
.........2 .........0 jalview.gui.AlignmentPanel[]
.........2 .........0 jalview.ext.ensembl.EnsemblSequenceFetcher.EnsemblFeatureType[]
.........2 .........0 jalview.ext.ensembl.EnsemblLookup
.........2 .........0 jalview.datamodel.features.RangeComparator
.........2 .........0 jalview.datamodel.SearchResults
.........2 .........0 jalview.datamodel.AlignmentAnnotation[]
.........2 .........0 jalview.datamodel.AlignmentAnnotation
.........2 .........0 jalview.controller.AlignViewController
.........2 .........0 com.stevesoft.pat.patInf
.........2 .........0 com.stevesoft.pat.Rthings
.........2 .........0 com.stevesoft.pat.Or
.........2 .........0 com.stevesoft.pat.NullPattern
.........1 .....11161 jalview.gui.AlignFrame
.........1 .......561 jalview.gui.AlignViewport
.........1 .......441 jalview.gui.AlignmentPanel
.........1 ........65 jalview.schemes.ColourSchemes
.........1 ........57 jalview.gui.SeqPanel
.........1 ........33 jalview.gui.SeqCanvas
.........1 ........19 javax.swing.JScrollPane
.........1 ........11 javax.swing.JTabbedPane
.........1 ........11 jalview.io.FileFormats
.........1 .........9 jalview.gui.FeatureRenderer
.........1 .........8 javax.swing.JRootPane
.........1 .........8 javax.swing.JInternalFrame.JDesktopIcon
.........1 .........8 jalview.gui.IdPanel
.........1 .........7 jalview.gui.AnnotationPanel
.........1 .........6 jalview.datamodel.ColumnSelection.IntList
.........1 .........6 jalview.datamodel.ColumnSelection
.........1 .........5 javax.swing.JToolTip
.........1 .........5 jalview.jbgui.GAlignFrame$79
.........1 .........4 jalview.io.gff.SequenceOntologyLite
.........1 .........3 sun.awt.image.SunWritableRaster$1
.........1 .........3 jalview.jbgui.GAlignFrame$72
.........1 .........3 jalview.gui.ViewSelectionMenu
.........1 .........2 javax.swing.text.GapContent.RemoveUndo
.........1 .........2 javax.swing.JLayeredPane
.........1 .........2 jalview.util.LinkedIdentityHashSet$1
.........1 .........2 jalview.jbgui.GAlignFrame$83
.........1 .........2 jalview.gui.SequenceRenderer
.........1 .........2 jalview.gui.IdCanvas
.........1 .........2 jalview.ext.ensembl.EnsemblLookup$1
.........1 .........1 swingjs.JSKeyEvent
.........1 .........1 javax.swing.JViewport
.........1 .........1 javax.swing.JMenuBar
.........1 .........1 java.util.concurrent.locks.ReentrantReadWriteLock.ReadLock
.........1 .........1 java.util.concurrent.locks.ReentrantReadWriteLock
.........1 .........1 jalview.viewmodel.seqfeatures.FeaturesDisplayed
.........1 .........1 jalview.jbgui.GAlignFrame$99
.........1 .........1 jalview.jbgui.GAlignFrame$8
.........1 .........1 jalview.jbgui.GAlignFrame$59
.........1 .........1 jalview.jbgui.GAlignFrame$57
.........1 .........1 jalview.jbgui.GAlignFrame$54
.........1 .........1 jalview.jbgui.GAlignFrame$50
.........1 .........1 jalview.jbgui.GAlignFrame$49
.........1 .........1 jalview.jbgui.GAlignFrame$46
.........1 .........1 jalview.jbgui.GAlignFrame$41
.........1 .........1 jalview.jbgui.GAlignFrame$40
.........1 .........1 jalview.jbgui.GAlignFrame$29
.........1 .........1 jalview.jbgui.GAlignFrame$23
.........1 .........1 jalview.jbgui.GAlignFrame$21
.........1 .........1 jalview.jbgui.GAlignFrame$14
.........1 .........1 jalview.jbgui.GAlignFrame$13
.........1 .........1 jalview.jbgui.GAlignFrame$116
.........1 .........1 jalview.jbgui.GAlignFrame$102
.........1 .........1 jalview.io.SequenceAnnotationReport$1
.........1 .........1 jalview.io.FileFormat$3
.........1 .........1 jalview.io.FileFormat$13
.........1 .........1 jalview.gui.ScalePanel
.........1 .........1 jalview.gui.ProgressBar
.........1 .........1 jalview.gui.IdwidthAdjuster
.........1 .........1 jalview.gui.ColourMenuHelper$1
.........1 .........1 jalview.gui.AnnotationLabels
.........1 .........1 jalview.gui.AlignFrame$3
.........1 .........1 jalview.datamodel.features.FeatureAttributes$1
.........1 .........1 jalview.datamodel.features.FeatureAttributes
.........1 .........0 swingjs.plaf.Resizer
.........1 .........0 swingjs.plaf.LazyActionMap
.........1 .........0 swingjs.plaf.JSTabbedPaneUI.TabbedPaneLayout
.........1 .........0 swingjs.plaf.JSTabbedPaneUI.Handler
.........1 .........0 swingjs.plaf.JSScrollPaneUI.Handler
.........1 .........0 swingjs.plaf.JSMenuBarUI.Handler
.........1 .........0 swingjs.plaf.JSInternalFrameUI.Handler
.........1 .........0 swingjs.plaf.DefaultMenuLayout
.........1 .........0 swingjs.JSMouse
.........1 .........0 swingjs.JSFrameViewer
.........1 .........0 sun.java2d.StateTrackable.State[]
.........1 .........0 javax.swing.text.GapContent.UndoPosRef
.........1 .........0 javax.swing.text.GapContent.InsertUndo
.........1 .........0 javax.swing.plaf.basic.BasicBorders.MarginBorder
.........1 .........0 javax.swing.ScrollPaneLayout.UIResource
.........1 .........0 javax.swing.JViewport.ViewListener
.........1 .........0 javax.swing.JTabbedPane.ModelListener
.........1 .........0 javax.swing.JRootPane.RootLayout
.........1 .........0 javax.swing.JRootPane$1
.........1 .........0 javax.swing.JComponent.IntVector
.........1 .........0 javajs.util.AjaxURLStreamHandler
.........1 .........0 javajs.api.JSFunction[]
.........1 .........0 java.util.concurrent.locks.ReentrantReadWriteLock.WriteLock
.........1 .........0 java.util.concurrent.ConcurrentHashMap.KeySet
.........1 .........0 java.util.concurrent.ConcurrentHashMap.KeyIterator
.........1 .........0 java.util.LinkedHashMap.LinkedKeySet
.........1 .........0 java.util.LinkedHashMap.LinkedKeyIterator
.........1 .........0 java.util.Hashtable.ValueCollection
.........1 .........0 java.util.Hashtable.EntrySet
.........1 .........0 java.util.Collections.UnmodifiableRandomAccessList
.........1 .........0 java.util.Collections.SynchronizedMap
.........1 .........0 java.util.Collections.EmptyIterator
.........1 .........0 java.util.Collections.EmptyEnumeration
.........1 .........0 java.lang.Thread[]
.........1 .........0 java.awt.event.WindowEvent
.........1 .........0 java.awt.event.FocusEvent
.........1 .........0 java.awt.dnd.DropTargetContext
.........1 .........0 java.awt.dnd.DropTarget
.........1 .........0 java.awt.color.ColorSpace
.........1 .........0 java.awt.Rectangle[]
.........1 .........0 java.awt.LightweightDispatcher
.........1 .........0 java.awt.EventQueueItem[]
.........1 .........0 jalview.workers.ConsensusThread
.........1 .........0 jalview.workers.AlignCalcManager
.........1 .........0 jalview.viewmodel.styles.ViewStyle
.........1 .........0 jalview.viewmodel.ViewportRanges
.........1 .........0 jalview.util.LinkedIdentityHashSet
.........1 .........0 jalview.schemes.JalviewColourScheme[]
.........1 .........0 jalview.renderer.ResidueColourFinder
.........1 .........0 jalview.renderer.AnnotationRenderer
.........1 .........0 jalview.jbgui.GAlignFrame$98
.........1 .........0 jalview.jbgui.GAlignFrame$97
.........1 .........0 jalview.jbgui.GAlignFrame$96
.........1 .........0 jalview.jbgui.GAlignFrame$95
.........1 .........0 jalview.jbgui.GAlignFrame$94
.........1 .........0 jalview.jbgui.GAlignFrame$93
.........1 .........0 jalview.jbgui.GAlignFrame$92
.........1 .........0 jalview.jbgui.GAlignFrame$91
.........1 .........0 jalview.jbgui.GAlignFrame$90
.........1 .........0 jalview.jbgui.GAlignFrame$9
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...5994529 ....111547
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