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ScoreMatrix SECONDARYSTRUCTURE
#
# The SECONDARY STRUCTURE substitution matrix, as in <paper name>
# The first line declares a ScoreMatrix with the name SECONDARYSTRUCTURE (shown in menus)
#
# Scores are not symbol case sensitive, unless column(s) are provided for lower case characters
# The 'guide symbol' at the start of each row of score values is optional
# Values may be integer or floating point, delimited by tab, space, comma or combinations
#
E H C *
E 1 0 0 0
H 0 1 0 0
C 0 0 1 0
* 0 0 0 1
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