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package uk.ac.bristol.star.cdf.record;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import uk.ac.bristol.star.cdf.CdfFormatException;
/**
* Keeps track of where a variable's record data is stored.
*
* <p>To work out the buffer and offset from which to read a record value,
* you can do something like this:
* <pre>
* int ient = recMap.getEntryIndex(irec);
* Object value =
* ient >= 0
* ? readBuffer(recMap.getBuf(ient), recMap.getOffset(ient,irec))
* : NO_STORED_VALUE;
* </pre>
*
*
* @author Mark Taylor
* @since 21 Jun 2013
*/
public class RecordMap {
private final int nent_;
private final int[] firsts_;
private final int[] lasts_;
private final Buf[] bufs_;
private final long[] offsets_;
private final int recSize_;
private Block lastBlock_;
/**
* Constructor.
*
* @param array of entries containing stored variable record blocks,
* need not be sorted
* @param recSize size of each variable record in bytes
*/
private RecordMap( Entry[] entries, int recSize ) {
recSize_ = recSize;
// Sort entries into order of record data.
Arrays.sort( entries );
// Store the entry information in a convenient form.
nent_ = entries.length;
firsts_ = new int[ nent_ ];
lasts_ = new int[ nent_ ];
bufs_ = new Buf[ nent_ ];
offsets_ = new long[ nent_ ];
for ( int ie = 0; ie < nent_; ie++ ) {
Entry entry = entries[ ie ];
firsts_[ ie ] = entry.first_;
lasts_[ ie ] = entry.last_;
bufs_[ ie ] = entry.buf_;
offsets_[ ie ] = entry.offset_;
}
// Initialise the most recently used block value
lastBlock_ = nent_ > 0 ? calculateBlock( 0 )
: new Block( -1, -1, -1 );
}
/**
* Returns the number of entries managed by this map.
*
* @return entry count
*/
public int getEntryCount() {
return nent_;
}
/**
* Returns the index of the entry containing a given record.
* If one of the entries contains the given record, return its index.
* If no entry contains it (the record is in a sparse region),
* return <code>(-fr-2)</code>, where <code>fr</code>
* is the index of the previous entry.
* A value of -1 indicates that the requested record is
* in a sparse region before the first stored record.
*
* <p>If non-negative, the result can be used with the
* <code>getBuf</code> and <code>getOffset</code> methods.
*
* @param irec record index
* @return index of entry covering <code>irec</code>, or a negative
* value if no entry covers it
*/
public synchronized int getEntryIndex( int irec ) {
// There's a good chance that the answer is the same as the last
// time somebody asked, so first of all do the cheap test to find
// out if that's the case. If so, return the cached one.
// Otherwise, do the work to find out the right answer.
if ( ! lastBlock_.contains( irec ) ) {
lastBlock_ = calculateBlock( irec );
}
assert lastBlock_.contains( irec );
return lastBlock_.ient_;
}
/**
* Returns the data buffer for a given entry.
* The entry index must correspond to an actual entry,
* that is it must not be negative.
*
* @param ient entry index
* @return buf
* @see #getEntryIndex
*/
public Buf getBuf( int ient ) {
return bufs_[ ient ];
}
/**
* Returns the byte offset for a record in a given entry.
* The <code>ient</code> parameter must reference an actual entry
* (it must be non-negative), and that entry must contain
* the given record <code>irec</code>,
*
* @param ient entry index for entry containing <code>irec</code>
* @param irec record index
* @return offset into the entry's buffer at which <code>irec</code>
* can be found
* @see #getEntryIndex
*/
public long getOffset( int ient, int irec ) {
assert irec >= firsts_[ ient ] && irec <= lasts_[ ient ];
return offsets_[ ient ] + ( irec - firsts_[ ient ] ) * recSize_;
}
/**
* Returns the offset of the last record in a given entry.
*
* @param ient non-negative entry index
* @return offset into ient's buffer of ient's final record
*/
public long getFinalOffsetInEntry( int ient ) {
return offsets_[ ient ]
+ ( lasts_[ ient ] - firsts_[ ient ] + 1 ) * recSize_;
}
/**
* Examines this map's lookup tables to determine the block covering
* a given record.
*
* @param irec record index
* @return block containing irec
*/
private Block calculateBlock( int irec ) {
// Look for the record in the first-record-of-entry list.
int firstIndex = binarySearch( firsts_, irec );
// If found, irec is in the corresponding block.
if ( firstIndex >= 0 ) {
return new Block( firstIndex,
firsts_[ firstIndex ], lasts_[ firstIndex ] );
}
// If it's located before the start, it's in a sparse block
// before the first actual record.
else if ( firstIndex == -1 ) {
return new Block( -firstIndex - 2, 0, firsts_[ 0 ] - 1 );
}
// Otherwise, record the first entry it's after the start of.
else {
firstIndex = -2 - firstIndex;
}
// Look for the record in the last-record-of-entry list.
int lastIndex = binarySearch( lasts_, irec );
// If found, irec is in the corresponding block.
if ( lastIndex >= 0 ) {
return new Block( lastIndex,
firsts_[ lastIndex ], lasts_[ lastIndex ] );
}
// If it's located after the end, it's in a sparse block
// after the last actual record.
else if ( lastIndex == - nent_ - 1 ) {
return new Block( lastIndex,
lasts_[ nent_ - 1 ], Integer.MAX_VALUE );
}
// Otherwise, record the last entry it's before the end of.
else {
lastIndex = -1 - lastIndex;
}
// If it's after the first record and before the last record
// of a single block, that's the one.
if ( firstIndex == lastIndex ) {
return new Block( firstIndex,
firsts_[ firstIndex ], lasts_[ firstIndex ] );
}
// Otherwise, it's in a sparse block between
// the end of the entry it's after the first record of, and
// the start of the entry it's before the last record of.
else {
return new Block( -firstIndex - 2,
lasts_[ firstIndex ] + 1,
firsts_[ lastIndex ] - 1 );
}
}
/**
* Returns a record map for a given variable.
*
* @param vdr variable descriptor record
* @param recFact record factory
* @param recSize size in bytes of each variable value record
* @return record map
*/
public static RecordMap createRecordMap( VariableDescriptorRecord vdr,
RecordFactory recFact,
int recSize )
throws IOException {
Compression compress = getCompression( vdr, recFact );
Buf buf = vdr.getBuf();
// Walk the entry linked list to assemble a list of entries.
List<Entry> entryList = new ArrayList<Entry>();
for ( long vxrOffset = vdr.vxrHead; vxrOffset != 0; ) {
VariableIndexRecord vxr =
recFact.createRecord( buf, vxrOffset,
VariableIndexRecord.class );
readEntries( vxr, buf, recFact, recSize, compress, entryList );
vxrOffset = vxr.vxrNext;
}
Entry[] entries = entryList.toArray( new Entry[ 0 ] );
// Make a RecordMap out of it.
return new RecordMap( entries, recSize );
}
/**
* Returns the compression type for a given variable.
*
* @param vdr variable descriptor record
* @param recFact record factory
* @return compression type, not null but may be NONE
*/
private static Compression getCompression( VariableDescriptorRecord vdr,
RecordFactory recFact )
throws IOException {
boolean hasCompress = Record.hasBit( vdr.flags, 2 );
if ( hasCompress && vdr.cprOrSprOffset != -1 ) {
CompressedParametersRecord cpr =
recFact.createRecord( vdr.getBuf(), vdr.cprOrSprOffset,
CompressedParametersRecord.class );
return Compression.getCompression( cpr.cType );
}
else {
return Compression.NONE;
}
}
/**
* Reads the list of Entries from a Variable Index Record
* into a supplied list.
*
* @param vxr variable index record
* @param buf data buffer containing vxr
* @param recFact record factory
* @param recSize size in bytes of each variable value record
* @param compress compression type
* @param list list into which any entries found are added
*/
private static void readEntries( VariableIndexRecord vxr, Buf buf,
RecordFactory recFact, int recSize,
Compression compress, List<Entry> list )
throws IOException {
// Go through each entry in the VXR.
// Each one may be a VVR, a CVVR, or a subordinate VXR
// (the format document is not very explicit about this, but it
// seems to be what happens).
// The only way to know which each entry is, is to examine
// the record type value for each one (the RecordFactory takes
// care of this by creating the right class).
int nent = vxr.nUsedEntries;
for ( int ie = 0; ie < nent; ie++ ) {
int first = vxr.first[ ie ];
int last = vxr.last[ ie ];
Record rec = recFact.createRecord( buf, vxr.offset[ ie ] );
// VVR: turn it directly into a new Entry and add to the list.
if ( rec instanceof VariableValuesRecord ) {
VariableValuesRecord vvr = (VariableValuesRecord) rec;
list.add( new Entry( first, last, buf,
vvr.getRecordsOffset() ) );
}
// CVVR: uncompress and turn it into a new Entry and add to list.
else if ( rec instanceof CompressedVariableValuesRecord ) {
CompressedVariableValuesRecord cvvr =
(CompressedVariableValuesRecord) rec;
int uncompressedSize = ( last - first + 1 ) * recSize;
Buf cBuf = Bufs.uncompress( compress, buf, cvvr.getDataOffset(),
uncompressedSize );
list.add( new Entry( first, last, cBuf, 0L ) );
}
// VXR: this is a reference to another sub-tree of entries.
// Handle it with a recursive call to this routine.
else if ( rec instanceof VariableIndexRecord ) {
// Amazingly, it's necessary to walk both the subtree of
// VXRs hanging off the entry list *and* the linked list
// of VXRs whose head is contained in this record.
// This does seem unnecessarily complicated, but I've
// seen at least one file where it happens
// (STEREO_STA_L1_MAG_20070708_V03.cdf).
VariableIndexRecord subVxr = (VariableIndexRecord) rec;
readEntries( subVxr, buf, recFact, recSize, compress, list );
for ( long nextVxrOff = subVxr.vxrNext; nextVxrOff != 0; ) {
VariableIndexRecord nextVxr =
recFact.createRecord( buf, nextVxrOff,
VariableIndexRecord.class );
readEntries( nextVxr, buf, recFact, recSize, compress,
list );
nextVxrOff = nextVxr.vxrNext;
}
}
// Some other record type - no ideas.
else {
String msg = new StringBuffer()
.append( "Unexpected record type (" )
.append( rec.getRecordType() )
.append( ") pointed to by VXR offset" )
.toString();
throw new CdfFormatException( msg );
}
}
}
/**
* Represents an entry in a Variable Index Record.
* It records the position and extent of a contiguous block of
* variable values (a Variable Values Record) for its variable.
*
* <p>Note that following the usage in VXR fields, the first and
* last values are inclusive, so the number of records represented
* by this entry is <code>last-first+1</code>.
*/
private static class Entry implements Comparable<Entry> {
private final int first_;
private final int last_;
private final Buf buf_;
private final long offset_;
/**
* Constructor.
*
* @param first index of first record in this entry
* @param last index of last record (inclusive) in this entry
* @param buf buffer containing the data
* @param offset byte offset into buffer at which the record block
* starts
*/
Entry( int first, int last, Buf buf, long offset ) {
first_ = first;
last_ = last;
buf_ = buf;
offset_ = offset;
}
/**
* Compares this entry to another on the basis of record indices.
*/
public int compareTo( Entry other ) {
return this.first_ - other.first_;
}
}
/**
* Represents a block of records, that is a contiguous sequence of records.
* This may corrrespond to an actual data-bearing Entry, or it may
* correspond to a gap where no Entry exists, before the first entry,
* or after the last, or between entries if the records are sparse.
*
* <p>The <code>ient</code> member gives the index of the corresponding
* Entry.
* If there is no corresponding entry (the record is in a sparse
* region), the value is <code>(-fr-2)</code>, where <code>fr</code>
* is the index of the previous entry.
* A value of -1 indicates that the requested record is
* in a sparse region before the first stored record.
*
* <p>Note that following the usage in VXR fields, the low and
* high values are inclusive, so the number of records represented
* by this entry is <code>high-low+1</code>.
*
*/
private static class Block {
final int ient_;
final int low_;
final int high_;
/**
* Constructor.
*
* @param ient index of Entry containing this block's data;
* negative value means sparse
* @param low lowest record index contained in this block
* @param high highest record index contained in this block
*/
Block( int ient, int low, int high ) {
ient_ = ient;
low_ = low;
high_ = high;
}
/**
* Indicates whether a given record falls within this block.
*
* @param irec record index
* @return true iff irec is covered by this block
*/
boolean contains( int irec ) {
return irec >= low_ && irec <= high_;
}
}
/**
* Performs a binary search on an array.
* Calls Arrays.binarySearch to do the work.
*
* @param array array in ascending sorted order
* @param key value to search for
* @return index of the search key, if it is contained in the list;
* otherwise, (-(insertion point) - 1).
* @see java.util.Arrays#binarySearch(int[],int)
*/
private static int binarySearch( int[] array, int key ) {
assert isSorted( array );
return Arrays.binarySearch( array, key );
}
/**
* Determines whether an integer array is currently sorted in
* ascending (well, non-descending) order.
*
* @param values array
* @return true iff sorted
*/
private static boolean isSorted( int[] values ) {
int nval = values.length;
for ( int i = 1; i < nval; i++ ) {
if ( values[ i ] < values[ i - 1 ] ) {
return false;
}
}
return true;
}
}
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