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jellyfish (2.2.10-2) unstable; urgency=medium
* debian/control: removed unused valgrind dependency
* Standards-Version: 4.3.0
* Improve reproducibilty, drop /usr/share/doc/jellyfish-
examples/examples/swig*
* Remove dependency_libs field in libjellyfish-2.0.la.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Mon, 24 Dec 2018 06:46:27 -0800
jellyfish (2.2.10-1) unstable; urgency=medium
* New upstream version
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
* Adapt watch file to also catch v$VERSION tarball names
* Clean up quilt patches
* Catch exceptions by reference
* Do not replace random '-L' strings in command line
Closes: #907819
* Drop python3-dna-jellyfish package since the Python module had issues in
build process and nobody seemed to be interested to help solving theses
-- Andreas Tille <tille@debian.org> Fri, 21 Sep 2018 08:45:53 +0200
jellyfish (2.2.8-3) unstable; urgency=medium
* Build and install fastq2sam, which fixes Debci tests
* Incorporates suggestions from the Multiarch hinter.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Fri, 16 Mar 2018 10:57:09 -0700
jellyfish (2.2.8-2) unstable; urgency=medium
* Add the missing small_mers.sh file, courtesy upstream.
* Fix arm/powerpc build, patch courtesy upstream (Closes: #890137)
-- Michael R. Crusoe <michael.crusoe@gmail.com> Mon, 12 Mar 2018 05:31:00 -0700
jellyfish (2.2.8-1) unstable; urgency=medium
* New upstream version
* Dropped rename-python-module-to-dna_jellyfish.patch as upstream has
incorporated it.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sun, 11 Feb 2018 09:21:51 -0800
jellyfish (2.2.7-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
* debhelper 11
-- Andreas Tille <tille@debian.org> Mon, 05 Feb 2018 22:22:17 +0100
jellyfish (2.2.6-6) unstable; urgency=medium
* Really apply portability patch
Closes: #871697
-- Andreas Tille <tille@debian.org> Fri, 01 Sep 2017 12:42:21 +0200
jellyfish (2.2.6-5) unstable; urgency=medium
* Make jellyfish portable (Thanks for the patch to Edmund Grimley Evans
<edmund.grimley.evans@gmail.com>)
Closes: #871697
-- Andreas Tille <tille@debian.org> Fri, 01 Sep 2017 00:09:35 +0200
jellyfish (2.2.6-4) unstable; urgency=medium
* Make sure reproducible patch will not break test suite (Thanks to
Chris Lamb <lamby@debian.org> for the fix)
Closes: #863015
* Autoreconf not needed with debhelper 10
* Do not parse debian/changelog
* Fix whatis entry in manpage
* Fix spelling in manpage
-- Andreas Tille <tille@debian.org> Mon, 28 Aug 2017 14:40:40 +0200
jellyfish (2.2.6-3) unstable; urgency=medium
* Explicitly disable parallel building
Closes: #873318
-- Andreas Tille <tille@debian.org> Sat, 26 Aug 2017 21:53:10 +0200
jellyfish (2.2.6-2) unstable; urgency=medium
* Ignore result of "big" test to let autopkgtest pass
* debhelper 10
* Parallel builds seem to cause problems - use --no-parallel
* d/watch: version=4
* Do not fail on compiler warnings to enable building with gcc-7.
(Thanks for the patch to Adrian Bunk <bunk@debian.org>)
Closes: #872262
* Enable full hardening
Closes: #865608
* Standards-Version: 4.1.0 (no changes needed)
-- Andreas Tille <tille@debian.org> Fri, 25 Aug 2017 14:46:44 +0200
jellyfish (2.2.6-1) unstable; urgency=medium
* New upstream version
* Rename python module from python3-jellyfish to python3-dna-jellyfish
(thanks for the patches to "Diego M. Rodriguez" <diego.plan9@gmail.com>)
Closes: #819016
* cme fix dpkg-control
* hardening=+all,-pie
-- Andreas Tille <tille@debian.org> Tue, 30 Aug 2016 14:16:52 +0200
jellyfish (2.2.5-1) unstable; urgency=medium
[ Andreas Tille ]
* Enable Python and Perl bindings
[ Scott Kitterman ]
* Rename python-jellyfish to python3-jellyfish
* Change python-dev build-dep to python3-all-dev (since this is a python3
extension)
* Add dh-python to build-depends
* Add building with python3
* Add call to setup.py in dh_autobuild override
[ Michael R. Crusoe ]
* New upstream version, fixes dataloss bug
* Upgrade Standards-Version to 3.9.7
* Mark python3- package as arch specifc, not indep; include shared library
dependencies
* Likewise with the -perl package; also build & install them
* debian/patches/drop-rpath: don't compile in a relative path as per policy
* debian/patches/modern-g++: use recent g++, not the unavailable version 4.4
* debian/patches/pkg-config-with-name: fix error in upstream: pkg-config was
called without the package name
* debian/rules: enable parallel builds & improve clean target
* debian/control: add myself as an uploader
-- Michael R. Crusoe <crusoe@ucdavis.edu> Sat, 12 Mar 2016 08:09:07 -0800
jellyfish (2.2.4-2) unstable; urgency=medium
* enable build with c++11 and -Werror=deprecated-declarations compile
flag (thanks for the hint to Gert Wollny)
Closes: #808537
-- Andreas Tille <tille@debian.org> Fri, 25 Dec 2015 12:17:44 +0100
jellyfish (2.2.4-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Tue, 10 Nov 2015 21:57:20 +0100
jellyfish (2.2.3-3) unstable; urgency=medium
* team upload
* include missing header
-- Michael R. Crusoe <crusoe@ucdavis.edu> Sun, 20 Sep 2015 08:46:24 +0200
jellyfish (2.2.3-2) unstable; urgency=medium
[ Charles Plessy ]
* Patch with Upstream commit a3c491a for GCC5; closes: #795847.
[ Andreas Tille ]
* Do not mention removed file from d/copyright
-- Andreas Tille <tille@debian.org> Thu, 20 Aug 2015 09:07:18 +0200
jellyfish (2.2.3-1) unstable; urgency=medium
[ Andreas Tille ]
* Replace unneeded dependency by @builddeps@ in debian/tests/control
* New version needs valgrind as Build-Depends to pass all tests
* New version closes: #777922
[ Charles Plessy ]
* New upstream release.
* Removed yaggo and clang patches, obsoleted upstream.
-- Andreas Tille <tille@debian.org> Fri, 03 Jul 2015 20:06:28 +0200
jellyfish (2.1.4-1) unstable; urgency=medium
* New upstream version
* d/watch: point to new location on Github
* cme fix dpkg-control
* new upstream version needs autoreconf
* New Build-Depends: yaggo, pkg-config, bc, time, procps
* debian/rules: Make sure package builds twice in a row
* d/copyright:
- Adapted to file locations in new upstream version
- Additional copyright paragraph for included libjsoncpp
- Additional copyright paragraph for unit tests
* checking whether it is possible to use Debian packaged libjsoncpp
failed - add lintian override to use internal one
* Split libjellyfish and libjellyfish-dev packages up from single
package, add jellyfish-examples package containing test suite
* Add autopkgtest
* Fix FTBFS with clang (thanks for the patch to Martin Steghöfer)
Closes: #749136
-- Andreas Tille <tille@debian.org> Thu, 09 Oct 2014 13:15:34 +0200
jellyfish (1.1.11-1) unstable; urgency=medium
* New upstream version
* Move debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
-- Andreas Tille <tille@debian.org> Fri, 21 Mar 2014 11:31:00 +0100
jellyfish (1.1.10-1) unstable; urgency=low
* New upstream version
Closes: #701423
* debian/{rules,install}: Make sure dynamic library will be installed
* debian/control:
- Removed DM-Upload-Allowed
- Standards-Version: 3.9.4 (no changes needed)
- Build-Depends autotools-dev
- canonical VCS URLs
* debian/lintian-overrides: Upstream decided to use a dynamic library
without really intending to make this a development package
* debian/doc-base: docbase control file
* debian/patches/man: refreshed + DEP3 description
-- Andreas Tille <tille@debian.org> Wed, 05 Jun 2013 11:58:53 +0200
jellyfish (1.1.5-1) unstable; urgency=low
* New upstream version fixing the FTBFS with gcc-4.7 bug
Closes: #667214
* debian/patches/fix-unused-but-set-variable.patch: Removed
because applied upstream
-- Andreas Tille <tille@debian.org> Mon, 21 May 2012 21:56:38 +0200
jellyfish (1.1.4-1) unstable; urgency=low
* New upstream version
* debian/patches/ptrdiff_t: Removed because applied upstream
* debian/patches/cmdline: Removed because upstream code was changed
in a way that it becomes superfluous
* debian/patches/fix-unused-but-set-variable.patch: Due to the use
of hardening flags warnings about unused-but-set-variable becomes
an error - start working on a patch
* debian/source/local-options: Add dpkg-source local-options hints
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- Move citation from long desciption to debian/upstream
- debhelper (>= 9)
* debian/upstream: Use the agreed way to specify citations
* debian/copyright: DEP5 verified using
cme fix dpkg-copyright
* debian/compat: 9
-- Andreas Tille <tille@debian.org> Sat, 31 Mar 2012 08:50:25 +0200
jellyfish (1.1.2-1) unstable; urgency=low
* Initial release. Closes: #644925.
-- Shaun Jackman <sjackman@debian.org> Mon, 10 Oct 2011 11:49:11 -0700
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