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#! /bin/sh
cd tests
. ./compat.sh
sort -k2,2 > ${pref}.md5sum <<EOF
8ebb01305cbb36754ef060c1e37d6e4d ${pref}.histo
EOF
echo "Counting 22-mers on ${nCPUs} CPU" && \
$JF count -q --matrix seq10m_matrix_22 -m 22 -t $nCPUs \
-o $pref -s 5000000 --timing ${pref}.timing seq1m_*.fq && \
$JF qhisto -f -l 0.0 -h 2.0 -i 0.1 ${pref}_0 > ${pref}.histo && \
check ${pref}.md5sum
RET=$?
cat ${pref}.timing
# [ -z "$NODEL" ] && \
# rm -f ${pref}_* ${pref}.md5sum ${pref}.histo ${pref}.timing
exit $RET
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