File: small_mers.sh

package info (click to toggle)
jellyfish 2.2.10-2
  • links: PTS, VCS
  • area: main
  • in suites: buster
  • size: 3,320 kB
  • sloc: cpp: 35,615; sh: 963; ruby: 578; makefile: 372; python: 165; perl: 36
file content (11 lines) | stat: -rw-r--r-- 195 bytes parent folder | download 
1
2
3
4
5
6
7
8
9
10
11
 
#! /bin/sh

cd tests
. ./compat.sh

sort -k2,2 > ${pref}.md5sum <<EOF

EOF

$JF count -t $nCPUs -o ${pref}_m10_10M.jf -s 1M -m 7 -C seq10m.fa
$JF histo ${pref}_m10_10M.jf > ${pref}_m10_10M.histo