1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
|
#!/usr/bin/make -f
DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
build3vers := $(shell py3versions -sv)
export DEB_BUILD_MAINT_OPTIONS=hardening=+all,-pie
export DH_OPTIONS
export PKG_CONFIG_LIBDIR=${CURDIR}
export PKG_CONFIG_ALLOW_SYSTEM_LIBS=true
export PKG_CONFIG_SYSROOT_DIR=${CURDIR}/debian/tmp/
export PERL_MM_OPT=INSTALLDIRS=vendor
export PYBUILD_BUILD_ARGS=build_ext --rpath "${CURDIR}/debian/tmp/usr/lib/${DEB_HOST_MULTIARCH}"
%:
dh $@ --with autoreconf,python3 #--parallel
override_dh_auto_install:
dh_auto_install -- install-data
override_dh_install:
# dh_install -X*.a -X*.la -Xpkgconfig
dh_install -ppython3-dna-jellyfish
pybuild -d swig/python --name dna-jellyfish
# pybuild -d swig/python --name dna-jellyfish --disable test/python3
# pybuild -d swig/python --name dna-jellyfish --test --test-args "${CURDIR}/swig/python/ test_string_mers.py"
# pybuild -d swig/python --name dna-jellyfish --test --test-args "${CURDIR}/swig/python/ test_hash_counter.py"
chrpath --delete debian/*/usr/lib/python*/dist-packages/_dna_jellyfish*.so
dh_auto_configure --sourcedirectory=swig/perl5
dh_auto_build --sourcedirectory=swig/perl5
dh_auto_install --sourcedirectory=swig/perl5
chrpath --delete debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--movedev "debian/tmp/usr/include/$(DEBPKGNAME)*/$(DEBPKGNAME)/*.hpp" usr/include/$(DEBPKGNAME) \
--movedev "debian/tmp/usr/include/$(DEBPKGNAME)*/$(DEBPKGNAME)/*.h" usr/include/$(DEBPKGNAME) \
debian/tmp/usr/lib/*/lib$(DEBPKGNAME)-*.so
override_dh_auto_configure:
dh_auto_configure -- --enable-swig --enable-perl-binding
override_dh_auto_clean:
set -e && for i in $(build3vers); do \
cd swig/python ; \
python$$i ./setup.py clean --all 2> /dev/null; \
cd ../.. ; \
done
dh_auto_clean
override_dh_clean:
dh_clean
if [ -d debian/tmp_save_tests ] ; then \
mv debian/tmp_save_tests/* tests ; \
rmdir debian/tmp_save_tests ; \
fi
rm -f tests/compat.sh
rm -f swig/python/jellyfish* swig/python/dna_jellyfish.py
override_dh_auto_build:
mkdir -p debian/tmp_save_tests
cp -a tests/* debian/tmp_save_tests
dh_auto_build -- all bin/generate_sequence bin/test_all
# cd doc ; RUBYLIB=$PWD PATH=$PATH:../bin make clean all ; cd ..
# broken
# jellyfish contains a *really* big test which should *not* run on autobuilders
# if you have a *really* large machine you can try to activate this test by
# uncommenting the following.
#override_dh_auto_test:
# BIG=1 dh_auto_test
|
