File: rules

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jellyfish 2.3.0-6
  • links: PTS, VCS
  • area: main
  • in suites: bullseye, sid
  • size: 3,296 kB
  • sloc: cpp: 35,695; sh: 988; ruby: 578; makefile: 384; python: 165; perl: 36
file content (90 lines) | stat: -rwxr-xr-x 3,544 bytes parent folder | download
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#!/usr/bin/make -f

include /usr/share/dpkg/default.mk

build3vers := $(shell py3versions -sv)

export DEB_BUILD_MAINT_OPTIONS=hardening=+all

export DH_OPTIONS
export PKG_CONFIG_LIBDIR=${CURDIR}
export PKG_CONFIG_ALLOW_SYSTEM_LIBS=true
export PKG_CONFIG_SYSROOT_DIR=${CURDIR}/debian/tmp/
export PKG_CONFIG_PATH=$(shell pkg-config --variable pc_path pkg-config)
export PERL_MM_OPT=INSTALLDIRS=vendor
export PYBUILD_BUILD_ARGS=build_ext -L${CURDIR}/.libs

export DEB_LDFLAGS_MAINT_APPEND = -lpthread
export PYBUILD_NAME = dna_jellyfish

%:
	dh $@ --with python3

#override_dh_installexamples:
#	dh_installexamples
#	sed '/SRCDIR=/d' debian/jellyfish-examples/usr/share/doc/jellyfish-examples/examples/compat.sh*
#	sed '/BUILDDIR=/d' debian/jellyfish-examples/usr/share/doc/jellyfish-examples/examples/compat.sh*
#	rm -f debian/jellyfish-examples/usr/share/doc/jellyfish-examples/examples/swig*

override_dh_auto_install:
	chrpath --delete bin/.libs/*
	dh_auto_install -- install-data
	dh_auto_install --sourcedirectory=swig/python --buildsystem=pybuild
	dh_auto_install --sourcedirectory=swig/perl5
	ls -l debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
	if [ ! -e debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so ] ; then sleep 1; fi
	chmod +w debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
	chrpath --delete debian/tmp/usr/lib/*/perl5/*/auto/jellyfish/jellyfish.so
	dh_install
	d-shlibmove --commit \
		    --multiarch \
		    --devunversioned \
		    --movedev "debian/tmp/usr/include/$(DEB_SOURCE)*/$(DEB_SOURCE)/*.hpp" usr/include/$(DEB_SOURCE) \
		    --movedev "debian/tmp/usr/include/$(DEB_SOURCE)*/$(DEB_SOURCE)/*.h" usr/include/$(DEB_SOURCE) \
		    --movedev config.h usr/include/$(DEB_SOURCE) \
			debian/tmp/usr/lib/*/lib$(DEB_SOURCE)-*.so
	sed -i "/dependency_libs/ s/'.*'/''/" ./debian/libjellyfish-2.0-dev/usr/lib/${DEB_HOST_MULTIARCH}/*.la
	chrpath --delete debian/*/usr/lib/python*/dist-packages/_dna_jellyfish*.so

override_dh_auto_configure:
	dh_auto_configure -- --enable-swig --enable-perl-binding --enable-htslib --enable-python-binding PYTHON=/usr/bin/python3
	dh_auto_configure --sourcedirectory=swig/perl5
	dh_auto_configure --sourcedirectory=swig/python --buildsystem=pybuild

override_dh_clean:
	dh_clean
	if [ -d debian/tmp_save_tests ] ; then \
	    mv debian/tmp_save_tests/* tests ; \
	    rmdir debian/tmp_save_tests ; \
	fi
	rm -f tests/compat.sh
	rm -f swig/python/jellyfish* # swig/python/dna_jellyfish.py
	rm -f swig/perl5/blib/arch/auto/jellyfish/jellyfish.so
	rm -f swig/perl5/blib/bin/.exists
	rm -f swig/perl5/blib/lib/.exists
	rm -f swig/perl5/blib/lib/auto/jellyfish/.exists
	rm -f swig/perl5/blib/man1/.exists
	rm -f swig/perl5/blib/man3/.exists
	rm -f swig/perl5/blib/script/.exists
	rm -f swig/perl5/jellyfish.bs
	rm -f swig/perl5/pm_to_blib
	rm -rf swig/perl5/MYMETA.json swig/perl5/MYMETA.yml swig/perl5/Makefile swig/perl5/blib/



override_dh_auto_build:
	mkdir -p debian/tmp_save_tests
	cp -a tests/* debian/tmp_save_tests
	dh_auto_build --no-parallel -- all bin/generate_sequence bin/test_all bin/fastq2sam
	dh_auto_install -- install-data
	dh_auto_build --sourcedirectory=swig/perl5
	dh_auto_build --sourcedirectory=swig/python --buildsystem=pybuild
#	cd doc ;  RUBYLIB=$PWD PATH=$PATH:../bin make clean all ; cd ..
#	broken

# jellyfish contains a *really* big test which should *not* run on autobuilders
# if you have a *really* large machine you can try to activate this test by
# uncommenting the following.
#override_dh_auto_test:
#	BIG=1 dh_auto_test
#	false