1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
|
/**
*
*/
package test.object;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertNull;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.util.Enumeration;
import ncsa.hdf.hdf5lib.H5;
import ncsa.hdf.hdf5lib.HDF5Constants;
import ncsa.hdf.object.FileFormat;
import ncsa.hdf.object.h5.H5File;
import org.junit.After;
import org.junit.AfterClass;
import org.junit.Before;
import org.junit.BeforeClass;
import org.junit.Test;
/**
* @author rsinha
*
*/
public class FileFormatTest {
private final static org.slf4j.Logger log = org.slf4j.LoggerFactory.getLogger(FileFormatTest.class);
private static final H5File H5FILE = new H5File();
private FileFormat testFile = null;
@BeforeClass
public static void createFile() throws Exception {
try {
int openID = H5.getOpenIDCount();
if (openID > 0)
System.out.println("FileFormatTest BeforeClass: Number of IDs still open: " + openID);
}
catch (Exception ex) {
ex.printStackTrace();
}
try {
H5TestFile.createTestFile(null);
}
catch (final Exception ex) {
System.out.println("*** Unable to create HDF5 test file. " + ex);
System.exit(-1);
}
}
@AfterClass
public static void checkIDs() throws Exception {
try {
int openID = H5.getOpenIDCount();
if (openID > 0)
System.out.println("FileFormatTest AfterClass: Number of IDs still open: " + openID);
}
catch (Exception ex) {
ex.printStackTrace();
}
}
@Before
public void openFiles() throws Exception {
try {
int openID = H5.getOpenIDCount();
if (openID > 0)
log.debug("Before: Number of IDs still open: " + openID);
}
catch (Exception ex) {
ex.printStackTrace();
}
testFile = H5FILE.open(H5TestFile.NAME_FILE_H5, FileFormat.WRITE);
assertNotNull(testFile);
testFile.open();
}
@After
public void removeFiles() throws Exception {
if (testFile != null) {
try {
testFile.close();
}
catch (final Exception ex) {
}
testFile = null;
}
try {
int openID = H5.getOpenIDCount();
if (openID > 0)
log.debug("After: Number of IDs still open: " + openID);
}
catch (Exception ex) {
ex.printStackTrace();
}
}
/**
* Test method for {@link ncsa.hdf.object.FileFormat#create(java.lang.String, int)}.
* <p>
* What to test:
* <ul>
* <li>Create a file that is already created with option FILE_CREATE_OPEN.
* <li>Create a file that is already created and opened with option FILE_CREATE_DELETE.
* <li>Create a file that is already created and not opened with FILE_CREATE_DELETE.
* <li>Create a file that is new with FILE_CREATE_DELETE.
* <li>Create a file that is new with FILE_CREATE_OPEN.
* </ul>
*
*/
/*
* RUTH - come back and update this with new method, createInstance public final void testCreateStringInt() {
* FileFormat f = FileFormat.getFileFormat(FileFormat.FILE_TYPE_HDF5);
*
* try { f.create(H5TestFile.NAME_FILE_H5, FileFormat.FILE_CREATE_OPEN); } catch (Exception ex) {
* fail("Create Failed " + ex.getMessage()); } try { f.create(H5TestFile.NAME_FILE_H5,
* FileFormat.FILE_CREATE_DELETE); } catch (Exception ex) { ; //Expected to fail. } try { f.create("simpleFile",
* FileFormat.FILE_CREATE_DELETE); } catch (Exception ex) { fail("Create failed " + ex.getMessage()); } try {
* f.create("testFile", FileFormat.FILE_CREATE_DELETE); } catch (Exception ex) { fail("Create failed " +
* ex.getMessage()); } try { f.create("testFile", FileFormat.FILE_CREATE_OPEN); } catch (Exception ex) {
* fail("Create failed " + ex.getMessage()); } }
*/
/**
* Test method for {@link ncsa.hdf.object.FileFormat#getNumberOfMembers()}.
* <p>
* <ul>
* <li>Test the number of compements.
* </ul>
*/
@Test
public void testGetNumberOfMembers() {
log.debug("testGetNumberOfMembers");
assertEquals(testFile.getNumberOfMembers(), 21);
int nObjs = 0;
try {
nObjs = H5.H5Fget_obj_count(testFile.getFID(), HDF5Constants.H5F_OBJ_ALL);
}
catch (final Exception ex) {
fail("H5.H5Fget_obj_count() failed. " + ex);
}
assertEquals(1, nObjs); // file id should be the only one left open
}
/**
* Test method for {@link ncsa.hdf.object.FileFormat#getFileFormat(java.lang.String)}.
* <p>
* <ul>
* <li>Test for HDF5.
* </ul>
*/
@Test
public void testGetFileFormat() {
log.debug("testGetFileFormat");
FileFormat f = FileFormat.getFileFormat("HDF5");
assertNotNull(f);
int nObjs = 0;
try {
nObjs = H5.H5Fget_obj_count(testFile.getFID(), HDF5Constants.H5F_OBJ_ALL);
}
catch (final Exception ex) {
fail("H5.H5Fget_obj_count() failed. " + ex);
}
assertEquals(1, nObjs); // file id should be the only one left open
}
/**
* Test method for {@link ncsa.hdf.object.FileFormat#getFileFormatKeys()}.
* <p>
* <ul>
* <li>current file formats are HDF5, HDF.
* </ul>
*/
@Test
public void testGetFileFormatKeys() {
log.debug("testGetFileFormatKeys");
Enumeration<String> e = FileFormat.getFileFormatKeys();
while (e.hasMoreElements())
assertNotNull(FileFormat.getFileFormat((String) e.nextElement()));
int nObjs = 0;
try {
nObjs = H5.H5Fget_obj_count(testFile.getFID(), HDF5Constants.H5F_OBJ_ALL);
}
catch (final Exception ex) {
fail("H5.H5Fget_obj_count() failed. " + ex);
}
assertEquals(1, nObjs); // file id should be the only one left open
}
/**
* Test method for {@link ncsa.hdf.object.FileFormat#getFID()}.
* <p>
* <ul>
* <li>Make sure the fid is not -1.
* </ul>
*/
@Test
public void testGetFID() {
log.debug("testGetFID");
assertTrue((testFile.getFID() != -1));
int nObjs = 0;
try {
nObjs = H5.H5Fget_obj_count(testFile.getFID(), HDF5Constants.H5F_OBJ_ALL);
}
catch (final Exception ex) {
fail("H5.H5Fget_obj_count() failed. " + ex);
}
assertEquals(1, nObjs); // file id should be the only one left open
}
/**
* Test method for {@link ncsa.hdf.object.FileFormat#getInstance(java.lang.String)}.
* <p>
* <ul>
* <li>Open an non existing file.
* <li>Open an exisiting file.
* </ul>
*/
@Test
public void testGetInstance() {
log.debug("testGetInstance");
H5File f = null;
try {
f = (H5File) FileFormat.getInstance("test_hdf5.h5");
}
catch (Exception ex) {
;
}
assertNull(f);
try {
f = (H5File) FileFormat.getInstance(H5TestFile.NAME_FILE_H5);
}
catch (Exception ex) {
fail("getInstance() failed" + ex.getMessage());
}
assertNotNull(f);
int nObjs = 0;
try {
nObjs = H5.H5Fget_obj_count(testFile.getFID(), HDF5Constants.H5F_OBJ_ALL);
}
catch (final Exception ex) {
fail("H5.H5Fget_obj_count() failed. " + ex);
}
assertEquals(1, nObjs); // file id should be the only one left open
}
/**
* Test method for {@link ncsa.hdf.object.FileFormat#getFileFormats()}.
* <p>
* <ul>
* <li>Test that the FileFormat object is formed for HDF5.
* </ul>
*/
@Test
public void testGetFileFormats() {
log.debug("testGetFileFormats");
FileFormat f = FileFormat.getFileFormat("HDF5");
assertNotNull(f);
FileFormat f1 = FileFormat.getFileFormat("ALL");
assertNull(f1);
int nObjs = 0;
try {
nObjs = H5.H5Fget_obj_count(testFile.getFID(), HDF5Constants.H5F_OBJ_ALL);
}
catch (final Exception ex) {
fail("H5.H5Fget_obj_count() failed. " + ex);
}
assertEquals(1, nObjs); // file id should be the only one left open
}
}
|
