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PREFIX = /usr/local/bin
TEST = test/
CC = gcc
CFLAGS += -O9 -Wall
DEBUGFLAGS = -ggdb -Wall
SOURCES = kalign2_distance_calculation.c kalign2_dp.c kalign2_input.c kalign2_main.c kalign2_mem.c kalign2_inferface.c kalign2_misc.c kalign2_tree.c kalign2_profile.c kalign2_alignment_types.c kalign2_feature.c kalign2_hirschberg.c kalign2_advanced_gaps.c kalign2_hirschberg_dna.c kalign2_output.c kalign2_string_matching.c kalign2_profile_alignment.c
PROGS = kalign
DEBUGPROGS = kalign_debug
OBJECTS = $(SOURCES:.c=.o)
DEBUGOBJECTS = $(SOURCES:.c=_debug.o)
.PHONY: clean
all: $(OBJECTS)
$(CC) $(CFLAGS) $(OBJECTS) -o $(PROGS) $(LDFLAGS)
%.o: %.c
$(CC) $(CFLAGS) -c $<
debug: $(DEBUGOBJECTS)
$(CC) $(DEBUGFLAGS) $(DEBUGOBJECTS) -o $(DEBUGPROGS)
%_debug.o: %.c
$(CC) $(DEBUGFLAGS) -c $< -o $@
install:
cp $(PROGS) /usr/local/bin/
clean:
rm -f $(PROGS) $(OBJECTS)
rm -f $(DEBUGPROGS) $(DEBUGOBJECTS)
rm -f config.status config.log config.h Makefile
rm -f test*
rm -f *~
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