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/*
kalign2_output.h
Released under GPL - see the 'COPYING' file
Copyright (C) 2006 Timo Lassmann <timolassmann@gmail.com>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Please send bug reports, comments etc. to:
timolassmann@gmail.com
*/
#include <ctype.h>
void aln_output(struct alignment* aln,struct parameters* param);
void msf_output(struct alignment* aln,char* outfile);
void fasta_output(struct alignment* aln,char* outfile);
void clustal_output(struct alignment* aln,char* outfile);
void macsim_output(struct alignment* aln,char* outfile,char* infile);
struct names* get_meaningful_names(struct alignment* aln,int id);
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