File: IDEAS

package info (click to toggle)
khmer 2.0%2Bdfsg-10
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 77,428 kB
  • ctags: 18,628
  • sloc: cpp: 99,718; python: 15,920; makefile: 512; sh: 141; xml: 19
file content (18 lines) | stat: -rw-r--r-- 482 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
get callback from partitioning working again!

also 1 bit/hash table entry, for basic partitioning?  (REDUCE MEM USAGE/FP)

replace memory structures for map, set to be cheaper; see Matt Austern's
  treatise.

run velvet??

probably want to randomize which group files different partitions go into...?

TODO in the future
----

put locks around the I/O functions.

Use SWIG for Python wrapper around C++.
    (Pure Cython - atomic ops? I/O performance tuning? probably bad idea...)